-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_776

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1140, 1282
Sorry, prediction GlimmerHMM_glimmerT_62222-T1 fails validation.
(ATG)	 CC	769-909	GT	AGG
(AAT)	 AG	1140-1282	GT	AGG
-recovered GlimmerHMM_glimmerT_62222-T1, initial, 769, 909
-recovered GlimmerHMM_glimmerT_62222-T1, internal, 1140, 1282
Valid prediction for GeneMark_model.108358_t
Couldn't classify 222, 461
Couldn't classify 4370, 4493
Sorry, prediction snap_scaffold_776-snap.1-T1 fails validation.
(GAG)	 AG	222-461	GT	AGG
(CCA)	 AG	763-909	GT	AGG
(AAT)	 AG	1140-1282	GT	AGG
(CGG)	 AG	4370-4493	GT	TGG
-recovered snap_scaffold_776-snap.1-T1, internal, 222, 461
-recovered snap_scaffold_776-snap.1-T1, internal, 763, 909
-recovered snap_scaffold_776-snap.1-T1, internal, 1140, 1282
-recovered snap_scaffold_776-snap.1-T1, internal, 4370, 4493
Valid prediction for Augustus_model.g41362.t1
Valid prediction for GlimmerHMM_glimmerT_62221-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4428, 4495
Sorry, prediction GeneMark_model.108357_t fails validation.
(ATG)	 AG	4336-4406	GT	GAG
(GCA)	 AG	4428-4495	GC	AAG
-recovered GeneMark_model.108357_t, initial, 4336, 4406
-recovered GeneMark_model.108357_t, internal, 4336, 4406
-recovered GeneMark_model.108357_t, internal, 4428, 4495
Valid prediction for GeneMark_model.108359_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4519
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support