-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_774

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 40, 51
Couldn't classify 4385, 4468
Sorry, prediction GeneMark_model.108355_t fails validation.
(GTG)	 AG	40-51	GT	GGG
(GAG)	 AG	162-277	GT	CCG
(GAG)	 AG	391-493	GT	GAG
(AGA)	 AG	1033-1107	GT	CTG
(CAC)	 AG	4055-4132	GT	TGG
(GAA)	 AG	4385-4468	GT	AAG
-recovered GeneMark_model.108355_t, internal, 40, 51
-recovered GeneMark_model.108355_t, internal, 162, 277
-recovered GeneMark_model.108355_t, internal, 391, 493
-recovered GeneMark_model.108355_t, internal, 1033, 1107
-recovered GeneMark_model.108355_t, internal, 4055, 4132
-recovered GeneMark_model.108355_t, internal, 4385, 4468
Valid prediction for snap_scaffold_774-snap.1-T1
add_exon() Sorry, snap_scaffold_774-snap.1-T1 122-312-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4121, 4314
Sorry, prediction Augustus_model.g41360.t1 fails validation.
(ATG)	 AC	3956-3977	GT	AGG
(GCC)	 AG	4121-4314	GT	AGG
-recovered Augustus_model.g41360.t1, initial, 3956, 3977
-recovered Augustus_model.g41360.t1, internal, 4121, 4314
Couldn't classify 372, 507
Sorry, prediction GlimmerHMM_glimmerT_62219-T1 fails validation.
(ATA)	 AG	372-507	GT	GGG
(GCC)	 AG	4121-4280	GT	ACG
(GTT)	 AG	4315-4474	AC	GAA
-recovered GlimmerHMM_glimmerT_62219-T1, terminal, 4315, 4474
-recovered GlimmerHMM_glimmerT_62219-T1, internal, 372, 507
-recovered GlimmerHMM_glimmerT_62219-T1, internal, 4121, 4280

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4539
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support