-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_773

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_773-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62218-T1
Couldn't classify 562, 709
Sorry, prediction Augustus_model.g41359.t1 fails validation.
(ATC)	 AG	562-709	GT	TAG
(CTG)	 AG	1099-1230	GT	AGG
(GTT)	 AG	1579-1691	GT	AGG
(ATT)	 AG	1864-2013	GT	AGG
(AGA)	 AG	2209-2349	GT	ATG
(GTG)	 AG	2484-2597	GT	CTG
(GAG)	 AG	2699-2771	GT	AGG
(GCT)	 AG	2859-2997	GT	AAG
(ACC)	 AG	3450-3553	GT	AAG
(GTT)	 AG	3770-3802	GT	AGG
(CGA)	 AG	4305-4444	TA	GAT
-recovered Augustus_model.g41359.t1, terminal, 4305, 4444
-recovered Augustus_model.g41359.t1, internal, 562, 709
-recovered Augustus_model.g41359.t1, internal, 1099, 1230
-recovered Augustus_model.g41359.t1, internal, 1579, 1691
-recovered Augustus_model.g41359.t1, internal, 1864, 2013
-recovered Augustus_model.g41359.t1, internal, 2209, 2349
-recovered Augustus_model.g41359.t1, internal, 2484, 2597
-recovered Augustus_model.g41359.t1, internal, 2699, 2771
-recovered Augustus_model.g41359.t1, internal, 2859, 2997
-recovered Augustus_model.g41359.t1, internal, 3450, 3553
-recovered Augustus_model.g41359.t1, internal, 3770, 3802
Valid prediction for GeneMark_model.108353_t
Valid prediction for GeneMark_model.108354_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4540
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support