-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_772

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108352_t
Couldn't classify 478, 569
Sorry, prediction snap_scaffold_772-snap.1-T1 fails validation.
(GCT)	 AG	478-569	GT	ACG
(GAA)	 AG	951-1503	AG	GAA
-recovered snap_scaffold_772-snap.1-T1, terminal, 951, 1503
-recovered snap_scaffold_772-snap.1-T1, internal, 478, 569
Couldn't classify 203, 220
Sorry, prediction GeneMark_model.108350_t fails validation.
(TGA)	 AG	203-220	GT	AGG
(CAG)	 AG	246-275	GT	GGG
(AGA)	 AG	299-307	GT	CAG
(GAG)	 AG	504-569	GT	ACG
(GAC)	 AG	938-946	GT	TGG
(GTG)	 AG	972-1076	GT	TGG
(GGG)	 AG	1100-1144	GT	TGG
(GGA)	 AG	1167-1271	GT	GGG
(GAA)	 AG	1309-1416	GT	GTG
(ACC)	 AG	1467-1503	AG	GAA
-recovered GeneMark_model.108350_t, terminal, 1467, 1503
-recovered GeneMark_model.108350_t, internal, 203, 220
-recovered GeneMark_model.108350_t, internal, 246, 275
-recovered GeneMark_model.108350_t, internal, 299, 307
-recovered GeneMark_model.108350_t, internal, 504, 569
-recovered GeneMark_model.108350_t, internal, 938, 946
-recovered GeneMark_model.108350_t, internal, 972, 1076
-recovered GeneMark_model.108350_t, internal, 1100, 1144
-recovered GeneMark_model.108350_t, internal, 1167, 1271
-recovered GeneMark_model.108350_t, internal, 1309, 1416

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108351_t
Couldn't classify 2278, 2397
Sorry, prediction snap_scaffold_772-snap.2-T1 fails validation.
(ATG)	 GG	1983-2096	GT	TAG
(GAG)	 AG	2278-2397	GT	AGG
-recovered snap_scaffold_772-snap.2-T1, initial, 1983, 2096
-recovered snap_scaffold_772-snap.2-T1, internal, 2278, 2397
Couldn't classify 1158, 1452
Sorry, prediction snap_scaffold_772-snap.3-T1 fails validation.
(GTC)	 AG	1158-1452	GT	GAG
(AAC)	 AG	1715-1964	CA	GAC
-recovered snap_scaffold_772-snap.3-T1, terminal, 1715, 1964
-recovered snap_scaffold_772-snap.3-T1, internal, 1158, 1452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4548
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support