-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_770

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1930, 2101
Sorry, prediction snap_scaffold_770-snap.1-T1 fails validation.
(CGA)	 AG	1930-2101	GT	AGG
(GCG)	 AG	3956-4040	GT	AAG
-recovered snap_scaffold_770-snap.1-T1, terminal, 3956, 4040
-recovered snap_scaffold_770-snap.1-T1, internal, 1930, 2101
-recovered snap_scaffold_770-snap.1-T1, internal, 3956, 4040
Couldn't classify 3956, 4018
Sorry, prediction GeneMark_model.108348_t fails validation.
(ATG)	 TA	3651-3688	GT	GGG
(GAG)	 AG	3711-3719	GT	GAG
(GAG)	 AG	3747-3817	GT	AAG
(GCG)	 AG	3956-4018	GT	CAG
-recovered GeneMark_model.108348_t, initial, 3651, 3688
-recovered GeneMark_model.108348_t, internal, 3711, 3719
-recovered GeneMark_model.108348_t, internal, 3747, 3817
-recovered GeneMark_model.108348_t, internal, 3956, 4018

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108347_t
Valid prediction for GlimmerHMM_glimmerT_62215-T1
Valid prediction for GeneMark_model.108345_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4580
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support