-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_77

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 20468, 20697
Sorry, prediction GlimmerHMM_glimmerT_61212-T1 fails validation.
(ATG)	 AG	20196-20345	GT	CTG
(AAT)	 AG	20468-20697	GT	AGG
-recovered GlimmerHMM_glimmerT_61212-T1, initial, 20196, 20345
-recovered GlimmerHMM_glimmerT_61212-T1, internal, 20196, 20345
-recovered GlimmerHMM_glimmerT_61212-T1, internal, 20468, 20697
Valid prediction for GlimmerHMM_glimmerT_61208-T1
Valid prediction for GeneMark_model.106432_t
Valid prediction for Augustus_model.g40718.t1
Valid prediction for GeneMark_model.106431_t
Valid prediction for GlimmerHMM_glimmerT_61211-T1
Valid prediction for snap_scaffold_77-snap.2-T1
Valid prediction for snap_scaffold_77-snap.1-T1
Valid prediction for Augustus_model.g40719.t1
Couldn't classify 20551, 20697
Sorry, prediction snap_scaffold_77-snap.7-T1 fails validation.
(ATG)	 AC	20217-20319	GT	AGG
(GCT)	 AG	20551-20697	GT	AGG
-recovered snap_scaffold_77-snap.7-T1, initial, 20217, 20319
-recovered snap_scaffold_77-snap.7-T1, internal, 20551, 20697
Valid prediction for snap_scaffold_77-snap.3-T1
Valid prediction for Augustus_model.g40720.t1
Valid prediction for GlimmerHMM_glimmerT_61209-T1
Valid prediction for Augustus_model.g40717.t1
Valid prediction for GlimmerHMM_glimmerT_61210-T1
Valid prediction for snap_scaffold_77-snap.5-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40721.t1
Valid prediction for snap_scaffold_77-snap.4-T1
Valid prediction for snap_scaffold_77-snap.6-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 21180
-exon list size: 47


building trellis

2.0    
4.1    
6.1    
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10.2    
12.2    
14.3    
16.3    
18.4    
20.4    
22.4    
24.5    
26.5    
28.6    
30.6    
32.7    
34.7    
36.7    
38.8    
40.8    
42.9    
44.9    
46.9    
49.0    
51.0    
53.1    
55.1    
57.1    
59.2    
61.2    
63.3    
65.3    
67.3    
69.4    
71.4    
73.5    
75.5    
77.6    
79.6    
81.6    
83.7    
85.7    
87.8    
89.8    
91.8    
93.9    
95.9    
98.0    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 20174, rend_intergenic: 18087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support