-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_768

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2031, 2308
Sorry, prediction snap_scaffold_768-snap.2-T1 fails validation.
(ATG)	 TA	94-136	GT	TGG
(CTC)	 AG	794-982	GT	GGG
(AGG)	 AG	2031-2308	GT	AAG
-recovered snap_scaffold_768-snap.2-T1, initial, 94, 136
-recovered snap_scaffold_768-snap.2-T1, internal, 794, 982
-recovered snap_scaffold_768-snap.2-T1, internal, 2031, 2308
Couldn't classify 3916, 4015
Sorry, prediction GeneMark_model.108342_t fails validation.
(ATG)	 CG	1972-1993	GT	GGG
(AGG)	 AG	2031-2082	GT	GCG
(AGA)	 AG	2122-2334	GT	CGG
(GGA)	 AG	3124-3243	GC	GAG
(ACA)	 AG	3277-3489	GT	GAG
(AGG)	 AG	3521-3670	GC	AGG
(GGG)	 AG	3697-3735	GT	GGG
(AGA)	 AG	3758-3796	GT	GAG
(AGG)	 AG	3826-3834	GT	GGG
(AGA)	 AG	3872-3892	GT	GGG
(GTA)	 AG	3916-4015	GT	TGG
-recovered GeneMark_model.108342_t, initial, 1972, 1993
-recovered GeneMark_model.108342_t, internal, 2031, 2082
-recovered GeneMark_model.108342_t, internal, 2122, 2334
-recovered GeneMark_model.108342_t, internal, 3124, 3243
-recovered GeneMark_model.108342_t, internal, 3277, 3489
-recovered GeneMark_model.108342_t, internal, 3521, 3670
-recovered GeneMark_model.108342_t, internal, 3697, 3735
-recovered GeneMark_model.108342_t, internal, 3758, 3796
-recovered GeneMark_model.108342_t, internal, 3826, 3834
-recovered GeneMark_model.108342_t, internal, 3872, 3892
-recovered GeneMark_model.108342_t, internal, 3916, 4015

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2492, 2631
Couldn't classify 4520, 4578
Sorry, prediction snap_scaffold_768-snap.1-T1 fails validation.
(GTG)	 AG	2492-2631	GT	AAG
(CCA)	 AG	3603-3760	GT	GGG
(TGA)	 AG	4520-4578	GT	TGG
-recovered snap_scaffold_768-snap.1-T1, internal, 2492, 2631
-recovered snap_scaffold_768-snap.1-T1, internal, 3603, 3760
-recovered snap_scaffold_768-snap.1-T1, internal, 4520, 4578
Valid prediction for GeneMark_model.108341_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2100, rend_intergenic: 94  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4591
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2100, rend_intergenic: 94  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support