-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_766

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 30, 280
Sorry, prediction snap_scaffold_766-snap.1-T1 fails validation.
(TGA)	 AG	30-280	GT	CAG
(TGA)	 AG	342-550	GT	CAG
(GCT)	 AG	610-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(CTA)	 AG	2014-2179	TT	AGT
-recovered snap_scaffold_766-snap.1-T1, terminal, 2014, 2179
-recovered snap_scaffold_766-snap.1-T1, internal, 30, 280
-recovered snap_scaffold_766-snap.1-T1, internal, 342, 550
-recovered snap_scaffold_766-snap.1-T1, internal, 610, 720
-recovered snap_scaffold_766-snap.1-T1, internal, 1789, 1994
Couldn't classify 4151, 4350
Sorry, prediction GlimmerHMM_glimmerT_62213-T1 fails validation.
(ATG)	 TC	586-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
-recovered GlimmerHMM_glimmerT_62213-T1, initial, 586, 720
-recovered GlimmerHMM_glimmerT_62213-T1, internal, 1789, 1994
-recovered GlimmerHMM_glimmerT_62213-T1, internal, 4151, 4350
Couldn't classify 4151, 4350
Sorry, prediction snap_scaffold_766-snap.3-T1 fails validation.
(ATG)	 CT	2190-2275	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
-recovered snap_scaffold_766-snap.3-T1, initial, 2190, 2275
-recovered snap_scaffold_766-snap.3-T1, internal, 4151, 4350
Couldn't classify 25, 172
Sorry, prediction GeneMark_model.108337_t fails validation.
(CAC)	 AG	25-172	GT	CAG
(GCT)	 AG	610-734	GT	TCG
(GGA)	 AG	979-1009	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(AGG)	 AG	2047-2106	GT	GAG
(ATC)	 AG	2129-2275	GT	GGG
(GGG)	 AG	2304-2423	GT	TGG
(CTC)	 AG	2490-2519	GT	GGG
(AGT)	 AG	2553-2577	TG	AAT
-recovered GeneMark_model.108337_t, terminal, 2553, 2577
-recovered GeneMark_model.108337_t, internal, 25, 172
-recovered GeneMark_model.108337_t, internal, 610, 734
-recovered GeneMark_model.108337_t, internal, 979, 1009
-recovered GeneMark_model.108337_t, internal, 1789, 1994
-recovered GeneMark_model.108337_t, internal, 2047, 2106
-recovered GeneMark_model.108337_t, internal, 2129, 2275
-recovered GeneMark_model.108337_t, internal, 2304, 2423
-recovered GeneMark_model.108337_t, internal, 2490, 2519
Couldn't classify 1, 295
Sorry, prediction GlimmerHMM_glimmerT_62212-T1 fails validation.
(CCT)	 GA	1-295	CT	GAC
Couldn't classify 610, 720
Couldn't classify 4568, 4603
Sorry, prediction Augustus_model.g41357.t1 fails validation.
(GCT)	 AG	610-720	GT	GGG
(AAC)	 AG	1789-1994	GT	GGG
(GTG)	 AG	4151-4350	GT	TGG
(GTC)	 AG	4568-4603		GA
-recovered Augustus_model.g41357.t1, internal, 610, 720
-recovered Augustus_model.g41357.t1, internal, 1789, 1994
-recovered Augustus_model.g41357.t1, internal, 4151, 4350

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_766-snap.2-T1
Couldn't classify 35, 107
Sorry, prediction GeneMark_model.108339_t fails validation.
(ACC)	 AG	35-107	GT	TGG
(GTC)	 AG	306-590	TT	AGT
-recovered GeneMark_model.108339_t, terminal, 306, 590
-recovered GeneMark_model.108339_t, internal, 35, 107
Valid prediction for GeneMark_model.108338_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2179, rend_intergenic: 1833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3341, rend_intergenic: 2190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4603
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2179, rend_intergenic: 1833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3341, rend_intergenic: 2190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support