-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_763

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62210-T1
Couldn't classify 19, 449
Sorry, prediction GeneMark_model.108333_t fails validation.
(GAC)	 AG	19-449	GT	AGG
(GCA)	 AG	693-753	GT	AGG
(GTC)	 AG	1243-1328	GT	AGG
(CAC)	 AG	1354-1418	GT	ACG
(CAG)	 AG	1545-1669	AG	AGA
-recovered GeneMark_model.108333_t, terminal, 1545, 1669
-recovered GeneMark_model.108333_t, internal, 19, 449
-recovered GeneMark_model.108333_t, internal, 693, 753
-recovered GeneMark_model.108333_t, internal, 1243, 1328
-recovered GeneMark_model.108333_t, internal, 1354, 1418
Valid prediction for Augustus_model.g41355.t1
Couldn't classify 47, 753
Sorry, prediction snap_scaffold_763-snap.1-T1 fails validation.
(AGG)	 AG	47-753	GT	AGG
(AAC)	 AG	1007-1070	GT	TGG
(GAT)	 AG	1296-1669	AG	AGA
-recovered snap_scaffold_763-snap.1-T1, terminal, 1296, 1669
-recovered snap_scaffold_763-snap.1-T1, internal, 47, 753
-recovered snap_scaffold_763-snap.1-T1, internal, 1007, 1070

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4609
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support