-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_762

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 631, 715
Sorry, prediction GeneMark_model.108332_t fails validation.
(AGC)	 AG	631-715	GT	AGG
(GGG)	 AG	818-831	GT	AGG
(GGG)	 AG	1391-1468	GT	AGG
(GGA)	 AG	1573-1758	GT	GGG
(AGA)	 AG	1784-1852	GT	GGG
(GAG)	 AG	1885-2031	GT	GGG
(AAA)	 AG	2143-2178	GT	GAG
(CAG)	 AG	2810-2869	GT	GGG
(AAA)	 AG	2981-3016	GT	GAG
(AGC)	 AG	3783-3831	TA	AGT
-recovered GeneMark_model.108332_t, terminal, 3783, 3831
-recovered GeneMark_model.108332_t, internal, 631, 715
-recovered GeneMark_model.108332_t, internal, 818, 831
-recovered GeneMark_model.108332_t, internal, 1391, 1468
-recovered GeneMark_model.108332_t, internal, 1573, 1758
-recovered GeneMark_model.108332_t, internal, 1784, 1852
-recovered GeneMark_model.108332_t, internal, 1885, 2031
-recovered GeneMark_model.108332_t, internal, 2143, 2178
-recovered GeneMark_model.108332_t, internal, 2810, 2869
-recovered GeneMark_model.108332_t, internal, 2981, 3016
Couldn't classify 1501, 2021
Sorry, prediction snap_scaffold_762-snap.1-T1 fails validation.
(TTG)	 AG	1501-2021	GT	TGG
-recovered snap_scaffold_762-snap.1-T1, internal, 1501, 2021

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4610
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support