-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_761

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3996, 4200
Sorry, prediction GlimmerHMM_glimmerT_62209-T1 fails validation.
(ATG)	 AG	204-232	GT	AAG
(AAG)	 AG	1779-2056	GT	CGG
(GTG)	 AG	3251-3404	GT	AGG
(ATG)	 AG	3996-4200	GT	AGG
-recovered GlimmerHMM_glimmerT_62209-T1, initial, 204, 232
-recovered GlimmerHMM_glimmerT_62209-T1, initial, 3996, 4200
-recovered GlimmerHMM_glimmerT_62209-T1, internal, 204, 232
-recovered GlimmerHMM_glimmerT_62209-T1, internal, 1779, 2056
-recovered GlimmerHMM_glimmerT_62209-T1, internal, 3251, 3404
-recovered GlimmerHMM_glimmerT_62209-T1, internal, 3996, 4200
Valid prediction for Augustus_model.g41354.t1
Couldn't classify 162, 284
Couldn't classify 4040, 4200
Sorry, prediction snap_scaffold_761-snap.1-T1 fails validation.
(TGC)	 AG	162-284	GT	CAG
(CGA)	 AG	1750-2095	GT	ACG
(GTG)	 AG	3251-3404	GT	AGG
(GCC)	 AG	3679-3875	GT	AGG
(AGG)	 AG	4040-4200	GT	AGG
-recovered snap_scaffold_761-snap.1-T1, internal, 162, 284
-recovered snap_scaffold_761-snap.1-T1, internal, 1750, 2095
-recovered snap_scaffold_761-snap.1-T1, internal, 3251, 3404
-recovered snap_scaffold_761-snap.1-T1, internal, 3679, 3875
-recovered snap_scaffold_761-snap.1-T1, internal, 4040, 4200
Couldn't classify 209, 232
Sorry, prediction GeneMark_model.108329_t fails validation.
(CCT)	 AG	209-232	GT	AAG
(AGA)	 AG	555-587	GT	ATG
(AGA)	 AG	799-897	GT	CAG
(AGA)	 AG	925-945	GT	CAG
(AGA)	 AG	973-1026	GT	AAG
(GAG)	 AG	1269-1293	GT	TGG
(CTG)	 AG	1801-2056	GT	CGG
(GGC)	 AG	2215-2234	GT	AGG
(ATG)	 AG	2386-2465	GT	GGG
(AGA)	 AG	2487-2495	GT	CGG
(AGA)	 AG	2525-2570	AA	AGA
-recovered GeneMark_model.108329_t, initial, 2386, 2465
-recovered GeneMark_model.108329_t, terminal, 2525, 2570
-recovered GeneMark_model.108329_t, internal, 209, 232
-recovered GeneMark_model.108329_t, internal, 555, 587
-recovered GeneMark_model.108329_t, internal, 799, 897
-recovered GeneMark_model.108329_t, internal, 925, 945
-recovered GeneMark_model.108329_t, internal, 973, 1026
-recovered GeneMark_model.108329_t, internal, 1269, 1293
-recovered GeneMark_model.108329_t, internal, 1801, 2056
-recovered GeneMark_model.108329_t, internal, 2215, 2234
-recovered GeneMark_model.108329_t, internal, 2386, 2465
-recovered GeneMark_model.108329_t, internal, 2487, 2495
Couldn't classify 4565, 4585
Sorry, prediction GeneMark_model.108331_t fails validation.
(ATG)	 CC	4006-4122	GT	GAG
(AGG)	 AG	4154-4200	GT	AGG
(TGA)	 AG	4565-4585	GT	GAG
-recovered GeneMark_model.108331_t, initial, 4006, 4122
-recovered GeneMark_model.108331_t, internal, 4154, 4200
-recovered GeneMark_model.108331_t, internal, 4565, 4585

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108330_t
Couldn't classify 369, 484
Couldn't classify 2748, 2887
Sorry, prediction snap_scaffold_761-snap.2-T1 fails validation.
(GGG)	 AG	369-484	GT	TTG
(CAG)	 AG	859-949	GT	GGG
(GGC)	 AG	1306-1493	GT	CGG
(AAG)	 AG	2241-2320	GT	AGG
(GAG)	 AG	2598-2732	GT	GGG
(ATC)	 AG	2748-2887	GT	ACG
-recovered snap_scaffold_761-snap.2-T1, internal, 369, 484
-recovered snap_scaffold_761-snap.2-T1, internal, 859, 949
-recovered snap_scaffold_761-snap.2-T1, internal, 1306, 1493
-recovered snap_scaffold_761-snap.2-T1, internal, 2241, 2320
-recovered snap_scaffold_761-snap.2-T1, internal, 2598, 2732
-recovered snap_scaffold_761-snap.2-T1, internal, 2748, 2887

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4200, rend_intergenic: 1730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4616
-exon list size: 64


building trellis

1.5    
3.0    
4.5    
6.1    
7.6    
9.1    
10.6    
12.1    
13.6    
15.2    
16.7    
18.2    
19.7    
21.2    
22.7    
24.2    
25.8    
27.3    
28.8    
30.3    
31.8    
33.3    
34.8    
36.4    
37.9    
39.4    
40.9    
42.4    
43.9    
45.5    
47.0    
48.5    
50.0    
51.5    
53.0    
54.5    
56.1    
57.6    
59.1    
60.6    
62.1    
63.6    
65.2    
66.7    
68.2    
69.7    
71.2    
72.7    
74.2    
75.8    
77.3    
78.8    
80.3    
81.8    
83.3    
84.8    
86.4    
87.9    
89.4    
90.9    
92.4    
93.9    
95.5    
97.0    
98.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4200, rend_intergenic: 1730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support