-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_760

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108327_t
Couldn't classify 40, 81
Sorry, prediction GeneMark_model.108328_t fails validation.
(GAG)	 AG	40-81	GT	ATG
(GAG)	 AG	1192-1473	GT	AGG
(GAG)	 AG	1498-1512	GT	AGG
(CAC)	 AG	1551-1562	GT	GAG
(AGG)	 AG	1772-1786	GT	GGG
(AGA)	 AG	1831-1866	GC	GAG
(AGA)	 AG	1894-1923	GT	GGG
(GAC)	 AG	1965-2042	GC	GAG
(AGA)	 AG	2104-2136	GC	GAG
(AGA)	 AG	2252-2688	GT	AGG
(CGC)	 AG	2770-2803	GT	ACG
(GGA)	 AG	2835-3102	AT	GAA
-recovered GeneMark_model.108328_t, terminal, 2835, 3102
-recovered GeneMark_model.108328_t, internal, 40, 81
-recovered GeneMark_model.108328_t, internal, 1192, 1473
-recovered GeneMark_model.108328_t, internal, 1498, 1512
-recovered GeneMark_model.108328_t, internal, 1551, 1562
-recovered GeneMark_model.108328_t, internal, 1772, 1786
-recovered GeneMark_model.108328_t, internal, 1831, 1866
-recovered GeneMark_model.108328_t, internal, 1894, 1923
-recovered GeneMark_model.108328_t, internal, 1965, 2042
-recovered GeneMark_model.108328_t, internal, 2104, 2136
-recovered GeneMark_model.108328_t, internal, 2252, 2688
-recovered GeneMark_model.108328_t, internal, 2770, 2803
Valid prediction for snap_scaffold_760-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4620
-exon list size: 31


building trellis

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72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support