-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_76

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40716.t1
Couldn't classify 571, 782
Sorry, prediction Augustus_model.g40715.t1 fails validation.
(TGT)	 AG	571-782	GT	ATG
(GTG)	 AG	923-992	GT	AGG
(GAA)	 AG	1125-1198	GT	AGG
(CTC)	 AG	1551-1626	TA	GAT
-recovered Augustus_model.g40715.t1, terminal, 1551, 1626
-recovered Augustus_model.g40715.t1, internal, 571, 782
-recovered Augustus_model.g40715.t1, internal, 923, 992
-recovered Augustus_model.g40715.t1, internal, 1125, 1198
Valid prediction for snap_scaffold_76-snap.2-T1
Valid prediction for GeneMark_model.106428_t
Valid prediction for GlimmerHMM_glimmerT_61207-T1
Valid prediction for GlimmerHMM_glimmerT_61205-T1
Couldn't classify 20822, 21017
Sorry, prediction GeneMark_model.106430_t fails validation.
(ATG)	 TT	20552-20699	GT	AGG
(GCT)	 AG	20822-21017	GT	CTG
-recovered GeneMark_model.106430_t, initial, 20552, 20699
-recovered GeneMark_model.106430_t, internal, 20822, 21017
Couldn't classify 571, 757
Sorry, prediction snap_scaffold_76-snap.1-T1 fails validation.
(TGT)	 AG	571-757	GT	AGG
(AAC)	 AG	1084-1198	GT	AGG
(TGA)	 AG	3251-3344	GA	GAG
-recovered snap_scaffold_76-snap.1-T1, terminal, 3251, 3344
-recovered snap_scaffold_76-snap.1-T1, internal, 571, 757
-recovered snap_scaffold_76-snap.1-T1, internal, 1084, 1198

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106427_t
Valid prediction for GeneMark_model.106429_t
Couldn't classify 22463, 22474
Sorry, prediction GeneMark_model.106426_t fails validation.
(ATG)	 AC	22186-22214	GT	TTG
(ACA)	 AG	22247-22327	GT	AGG
(GGG)	 AG	22369-22437	GT	GGG
(GTG)	 AG	22463-22474	GT	GGG
-recovered GeneMark_model.106426_t, initial, 22186, 22214
-recovered GeneMark_model.106426_t, internal, 22247, 22327
-recovered GeneMark_model.106426_t, internal, 22369, 22437
-recovered GeneMark_model.106426_t, internal, 22463, 22474
Valid prediction for GlimmerHMM_glimmerT_61206-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 22915
-exon list size: 61


building trellis

1.6    
3.2    
4.8    
6.3    
7.9    
9.5    
11.1    
12.7    
14.3    
15.9    
17.5    
19.0    
20.6    
22.2    
23.8    
25.4    
27.0    
28.6    
30.2    
31.7    
33.3    
34.9    
36.5    
38.1    
39.7    
41.3    
42.9    
44.4    
46.0    
47.6    
49.2    
50.8    
52.4    
54.0    
55.6    
57.1    
58.7    
60.3    
61.9    
63.5    
65.1    
66.7    
68.3    
69.8    
71.4    
73.0    
74.6    
76.2    
77.8    
79.4    
81.0    
82.5    
84.1    
85.7    
87.3    
88.9    
90.5    
92.1    
93.7    
95.2    
96.8    
98.4    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support