-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_759

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 267, 364
Sorry, prediction snap_scaffold_759-snap.2-T1 fails validation.
(GCC)	 AG	267-364	GT	GAG
(TGA)	 AG	483-570	GT	CGG
(GAG)	 AG	1006-1139	GT	AGG
(GTC)	 AG	1217-1334	CG	GAC
add_exon() Sorry, snap_scaffold_759-snap.2-T1 267-364-terminal-2 is invalid.
-recovered snap_scaffold_759-snap.2-T1, terminal, 267, 364
-recovered snap_scaffold_759-snap.2-T1, terminal, 1217, 1334
-recovered snap_scaffold_759-snap.2-T1, internal, 267, 364
-recovered snap_scaffold_759-snap.2-T1, internal, 483, 570
-recovered snap_scaffold_759-snap.2-T1, internal, 1006, 1139
Valid prediction for CodingQuarry_transcript_57672-T1
Valid prediction for GlimmerHMM_glimmerT_62208-T1
Couldn't classify 267, 364
Sorry, prediction pasa_asmbl_51606.p1 fails validation.
(GCC)	 AG	267-364	GT	GAG
(TGA)	 AG	483-570	GT	CGG
(GAG)	 AG	1006-1139	GT	AGG
(GTC)	 AG	1217-1334	CG	GAC
add_exon() Sorry, pasa_asmbl_51606.p1 267-364-terminal-2 is invalid.
-recovered pasa_asmbl_51606.p1, terminal, 267, 364
-recovered pasa_asmbl_51606.p1, terminal, 1217, 1334
-recovered pasa_asmbl_51606.p1, internal, 267, 364
-recovered pasa_asmbl_51606.p1, internal, 483, 570
-recovered pasa_asmbl_51606.p1, internal, 1006, 1139
Couldn't classify 267, 364
Sorry, prediction Augustus_model.g41353.t1 fails validation.
(GCC)	 AG	267-364	GT	GAG
(TGA)	 AG	483-570	GT	CGG
(GAG)	 AG	1006-1139	GT	AGG
(GTC)	 AG	1217-1334	CG	GAC
add_exon() Sorry, Augustus_model.g41353.t1 267-364-terminal-2 is invalid.
-recovered Augustus_model.g41353.t1, terminal, 267, 364
-recovered Augustus_model.g41353.t1, terminal, 1217, 1334
-recovered Augustus_model.g41353.t1, internal, 267, 364
-recovered Augustus_model.g41353.t1, internal, 483, 570
-recovered Augustus_model.g41353.t1, internal, 1006, 1139
Couldn't classify 42, 123
Sorry, prediction GeneMark_model.108326_t fails validation.
(GGA)	 AG	42-123	GT	AGG
(GCC)	 AG	267-364	GT	GAG
(TGA)	 AG	483-570	GT	CGG
(GAG)	 AG	1006-1139	GT	AGG
(GTC)	 AG	1217-1334	CG	GAC
add_exon() Sorry, GeneMark_model.108326_t 267-364-terminal-2 is invalid.
-recovered GeneMark_model.108326_t, terminal, 267, 364
-recovered GeneMark_model.108326_t, terminal, 1217, 1334
-recovered GeneMark_model.108326_t, internal, 42, 123
-recovered GeneMark_model.108326_t, internal, 267, 364
-recovered GeneMark_model.108326_t, internal, 483, 570
-recovered GeneMark_model.108326_t, internal, 1006, 1139

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4332, 4404
Sorry, prediction snap_scaffold_759-snap.1-T1 fails validation.
(ATG)	 GG	3214-3455	GT	GGG
(GGG)	 AG	4054-4179	GT	AGG
(AGC)	 AG	4332-4404	GT	GGG
-recovered snap_scaffold_759-snap.1-T1, initial, 3214, 3455
-recovered snap_scaffold_759-snap.1-T1, internal, 4054, 4179
-recovered snap_scaffold_759-snap.1-T1, internal, 4332, 4404

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1423, rend_intergenic: 267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4636
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1423, rend_intergenic: 267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support