-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_757

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g41352.t1
Couldn't classify 4352, 4462
Sorry, prediction pasa_asmbl_51605.p1 fails validation.
(ATG)	 AC	3134-3203	GT	AGG
(GAG)	 AG	3531-3667	GT	GGG
(GAC)	 AG	3983-4078	GT	GGG
(GGA)	 AG	4352-4462	GA	ACG
-recovered pasa_asmbl_51605.p1, initial, 3134, 3203
-recovered pasa_asmbl_51605.p1, internal, 3531, 3667
-recovered pasa_asmbl_51605.p1, internal, 3983, 4078
Valid prediction for GlimmerHMM_glimmerT_62205-T1
Couldn't classify 4352, 4503
Sorry, prediction GeneMark_model.108324_t fails validation.
(ATG)	 GC	3578-3667	GT	GGG
(GAC)	 AG	3983-4078	GT	GGG
(GGA)	 AG	4352-4503	GT	GAG
-recovered GeneMark_model.108324_t, initial, 3578, 3667
-recovered GeneMark_model.108324_t, internal, 3983, 4078
-recovered GeneMark_model.108324_t, internal, 4352, 4503
Couldn't classify 3107, 3203
Couldn't classify 4352, 4503
Sorry, prediction snap_scaffold_757-snap.2-T1 fails validation.
(CAG)	 AG	3107-3203	GT	AGG
(GAG)	 AG	3531-3667	GT	GGG
(GAC)	 AG	3983-4078	GT	GGG
(GGA)	 AG	4352-4503	GT	GAG
-recovered snap_scaffold_757-snap.2-T1, internal, 3107, 3203
-recovered snap_scaffold_757-snap.2-T1, internal, 3531, 3667
-recovered snap_scaffold_757-snap.2-T1, internal, 3983, 4078
-recovered snap_scaffold_757-snap.2-T1, internal, 4352, 4503

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3883, 4067
Sorry, prediction GeneMark_model.108323_t fails validation.
(ATG)	 AA	1157-1182	GT	ATG
(GAT)	 AG	1233-1241	GT	GTG
(ATT)	 AG	1268-1280	GT	AAG
(GAA)	 AG	3686-3727	GT	TGG
(GAG)	 AG	3883-4067	GT	GAG
-recovered GeneMark_model.108323_t, initial, 1157, 1182
-recovered GeneMark_model.108323_t, internal, 1233, 1241
-recovered GeneMark_model.108323_t, internal, 1268, 1280
-recovered GeneMark_model.108323_t, internal, 3686, 3727
-recovered GeneMark_model.108323_t, internal, 3883, 4067
Valid prediction for GlimmerHMM_glimmerT_62204-T1
Couldn't classify 3883, 4044
Sorry, prediction Augustus_model.g41351.t1 fails validation.
(ATG)	 TT	1559-1594	GT	CCG
(GAA)	 AG	3686-3727	GT	TGG
(GAG)	 AG	3883-4044	GT	AGG
-recovered Augustus_model.g41351.t1, initial, 1559, 1594
-recovered Augustus_model.g41351.t1, internal, 3686, 3727
-recovered Augustus_model.g41351.t1, internal, 3883, 4044
Couldn't classify 1335, 1385
Sorry, prediction snap_scaffold_757-snap.1-T1 fails validation.
(GTG)	 AG	1335-1385	GT	AGG
(GAA)	 AG	3686-3727	GT	TGG
(GAG)	 AG	3883-4093	GT	GGG
(TGC)	 AG	4275-4312	TT	AGT
-recovered snap_scaffold_757-snap.1-T1, terminal, 4275, 4312
-recovered snap_scaffold_757-snap.1-T1, internal, 1335, 1385
-recovered snap_scaffold_757-snap.1-T1, internal, 3686, 3727
-recovered snap_scaffold_757-snap.1-T1, internal, 3883, 4093

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3306, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4640
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3306, rend_intergenic: 3107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support