-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_756

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62203-T1
Couldn't classify 925, 1073
Sorry, prediction Augustus_model.g41350.t1 fails validation.
(TAC)	 AG	925-1073	GT	AGG
(GTT)	 AG	1770-1934	GT	CGG
(GTA)	 AG	2075-2656	GT	AAG
(GTA)	 AG	3353-3590	GT	ATG
(GTG)	 AG	4038-4208	AC	AAA
-recovered Augustus_model.g41350.t1, terminal, 4038, 4208
-recovered Augustus_model.g41350.t1, internal, 925, 1073
-recovered Augustus_model.g41350.t1, internal, 1770, 1934
-recovered Augustus_model.g41350.t1, internal, 2075, 2656
-recovered Augustus_model.g41350.t1, internal, 3353, 3590
Couldn't classify 4038, 4204
Sorry, prediction GeneMark_model.108322_t fails validation.
(ATG)	 TG	403-542	GC	AAG
(AGA)	 AG	574-588	GC	GAG
(AGA)	 AG	613-672	GT	GAG
(AGG)	 AG	695-724	GT	GAG
(AGA)	 AG	745-814	GT	TTG
(TAC)	 AG	925-1073	GT	AGG
(GTT)	 AG	1770-1934	GT	CGG
(GTA)	 AG	2075-2656	GT	AAG
(GTA)	 AG	3353-3569	GC	AGG
(GTG)	 AG	4038-4204	GT	AAG
-recovered GeneMark_model.108322_t, initial, 403, 542
-recovered GeneMark_model.108322_t, internal, 574, 588
-recovered GeneMark_model.108322_t, internal, 613, 672
-recovered GeneMark_model.108322_t, internal, 695, 724
-recovered GeneMark_model.108322_t, internal, 745, 814
-recovered GeneMark_model.108322_t, internal, 925, 1073
-recovered GeneMark_model.108322_t, internal, 1770, 1934
-recovered GeneMark_model.108322_t, internal, 2075, 2656
-recovered GeneMark_model.108322_t, internal, 3353, 3569
-recovered GeneMark_model.108322_t, internal, 4038, 4204
Couldn't classify 925, 1073
Sorry, prediction snap_scaffold_756-snap.1-T1 fails validation.
(TAC)	 AG	925-1073	GT	AGG
(GTT)	 AG	1770-1934	GT	CGG
(GTA)	 AG	2075-2656	GT	AAG
(GTA)	 AG	3353-3590	GT	ATG
(GTG)	 AG	4038-4208	AC	AAA
-recovered snap_scaffold_756-snap.1-T1, terminal, 4038, 4208
-recovered snap_scaffold_756-snap.1-T1, internal, 925, 1073
-recovered snap_scaffold_756-snap.1-T1, internal, 1770, 1934
-recovered snap_scaffold_756-snap.1-T1, internal, 2075, 2656
-recovered snap_scaffold_756-snap.1-T1, internal, 3353, 3590

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108321_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4646
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support