-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_755

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62202-T1
Couldn't classify 714, 797
Sorry, prediction GeneMark_model.108319_t fails validation.
(GTT)	 AG	714-797	GT	GAG
(TCG)	 AG	829-861	GT	GGG
(GCG)	 AG	914-991	GT	AGG
(GAG)	 AG	1015-1204	CA	AAC
-recovered GeneMark_model.108319_t, terminal, 1015, 1204
-recovered GeneMark_model.108319_t, internal, 714, 797
-recovered GeneMark_model.108319_t, internal, 829, 861
-recovered GeneMark_model.108319_t, internal, 914, 991
Couldn't classify 809, 1138
Sorry, prediction snap_scaffold_755-snap.1-T1 fails validation.
(GAT)	 AG	809-1138	GT	AGG
(TGT)	 AG	1918-2279	AT	AGA
-recovered snap_scaffold_755-snap.1-T1, terminal, 1918, 2279
-recovered snap_scaffold_755-snap.1-T1, internal, 809, 1138

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2472, 2544
Sorry, prediction GeneMark_model.108320_t fails validation.
(GGA)	 AG	2472-2544	GT	GAG
(ACA)	 AG	2574-2783	GT	GAG
(ACA)	 AG	2813-2906	CG	GAC
-recovered GeneMark_model.108320_t, terminal, 2813, 2906
-recovered GeneMark_model.108320_t, internal, 2472, 2544
-recovered GeneMark_model.108320_t, internal, 2574, 2783

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4661
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support