-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_754

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 104
Sorry, prediction GeneMark_model.108317_t fails validation.
(AAA)	 AG	39-104	GT	GAG
(GGA)	 AG	128-239	AC	AAA
-recovered GeneMark_model.108317_t, terminal, 39, 104
-recovered GeneMark_model.108317_t, terminal, 128, 239
-recovered GeneMark_model.108317_t, internal, 39, 104
Couldn't classify 4265, 4276
Sorry, prediction GeneMark_model.108318_t fails validation.
(ATG)	 GC	2201-2235	GT	ATG
(GAC)	 AG	2260-2325	GT	GGG
(AGA)	 AG	3697-3741	GT	CAG
(AGA)	 AG	3797-4116	GT	AGG
(ACG)	 AG	4144-4240	GT	CAG
(GGG)	 AG	4265-4276	GT	AAG
-recovered GeneMark_model.108318_t, initial, 2201, 2235
-recovered GeneMark_model.108318_t, internal, 2260, 2325
-recovered GeneMark_model.108318_t, internal, 3697, 3741
-recovered GeneMark_model.108318_t, internal, 3797, 4116
-recovered GeneMark_model.108318_t, internal, 4144, 4240
-recovered GeneMark_model.108318_t, internal, 4265, 4276

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 419, 502
Couldn't classify 2200, 2301
Sorry, prediction snap_scaffold_754-snap.1-T1 fails validation.
(GGC)	 AG	419-502	GT	GGG
(GCT)	 AG	2200-2301	GT	AGG
-recovered snap_scaffold_754-snap.1-T1, internal, 419, 502
-recovered snap_scaffold_754-snap.1-T1, internal, 2200, 2301
Couldn't classify 419, 502
Sorry, prediction Augustus_model.g41349.t1 fails validation.
(GGC)	 AG	419-502	GT	GGG
(GCT)	 AG	2200-2352	CC	AAC
-recovered Augustus_model.g41349.t1, terminal, 2200, 2352
-recovered Augustus_model.g41349.t1, internal, 419, 502
Couldn't classify 419, 502
Sorry, prediction GlimmerHMM_glimmerT_62201-T1 fails validation.
(GGC)	 AG	419-502	GT	GGG
(GCT)	 AG	2200-2352	CC	AAC
-recovered GlimmerHMM_glimmerT_62201-T1, terminal, 2200, 2352
-recovered GlimmerHMM_glimmerT_62201-T1, internal, 419, 502

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4667
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support