-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_753

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 35, 70
Sorry, prediction GeneMark_model.108316_t fails validation.
(GGG)	 AG	35-70	GT	CAG
(GCC)	 AG	176-238	GT	TTG
(GGG)	 AG	1094-1120	GT	GAG
(AGG)	 AG	1620-1649	GT	CTG
(AGG)	 AG	1679-1690	GT	GAG
(GCT)	 AG	1721-1761	GT	AGG
(GAT)	 AG	3185-3326	GT	GGG
(GGG)	 AG	3348-3358	GT	AAG
(ACC)	 AG	3579-3664	GT	AGG
(GCA)	 AG	3761-3907	GG	GAG
-recovered GeneMark_model.108316_t, terminal, 1679, 1690
-recovered GeneMark_model.108316_t, terminal, 3761, 3907
-recovered GeneMark_model.108316_t, internal, 35, 70
-recovered GeneMark_model.108316_t, internal, 176, 238
-recovered GeneMark_model.108316_t, internal, 1094, 1120
-recovered GeneMark_model.108316_t, internal, 1620, 1649
-recovered GeneMark_model.108316_t, internal, 1679, 1690
-recovered GeneMark_model.108316_t, internal, 1721, 1761
-recovered GeneMark_model.108316_t, internal, 3185, 3326
-recovered GeneMark_model.108316_t, internal, 3348, 3358
-recovered GeneMark_model.108316_t, internal, 3579, 3664
Valid prediction for Augustus_model.g41348.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62200-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62200-T1 754-1216-terminal-1 is invalid.
Couldn't classify 766, 1207
Couldn't classify 3203, 3260
Sorry, prediction snap_scaffold_753-snap.1-T1 fails validation.
(TGT)	 AG	766-1207	GT	CCG
(CCT)	 AG	1337-1512	GT	AAG
(CCT)	 AG	3203-3260	GT	CAG
-recovered snap_scaffold_753-snap.1-T1, internal, 766, 1207
-recovered snap_scaffold_753-snap.1-T1, internal, 1337, 1512
-recovered snap_scaffold_753-snap.1-T1, internal, 3203, 3260

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4668
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support