-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_752

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 116, 230
Couldn't classify 2118, 2198
Sorry, prediction snap_scaffold_752-snap.1-T1 fails validation.
(CTA)	 AG	116-230	GT	AGG
(GAG)	 AG	822-914	GT	AGG
(CTT)	 AG	2118-2198	GT	ACG
add_exon() Sorry, snap_scaffold_752-snap.1-T1 116-230-terminal-3 is invalid.
-recovered snap_scaffold_752-snap.1-T1, terminal, 116, 230
-recovered snap_scaffold_752-snap.1-T1, internal, 116, 230
-recovered snap_scaffold_752-snap.1-T1, internal, 822, 914
-recovered snap_scaffold_752-snap.1-T1, internal, 2118, 2198
Couldn't classify 4384, 4443
Sorry, prediction GeneMark_model.108315_t fails validation.
(ATG)	 TG	2061-2077	GT	CTG
(CGG)	 AG	2130-2198	GT	ACG
(AGA)	 AG	2327-2339	GT	GGG
(GCC)	 AG	2528-2540	GT	CGG
(GAG)	 AG	2939-2945	GT	AGG
(GGA)	 AG	3053-3061	GT	GAG
(GGA)	 AG	3094-3114	GT	AGG
(AGA)	 AG	3172-3239	GT	AGG
(CCT)	 AG	3779-3873	GT	AGG
(CCG)	 AG	4384-4443	GT	CAG
-recovered GeneMark_model.108315_t, initial, 2061, 2077
-recovered GeneMark_model.108315_t, internal, 2130, 2198
-recovered GeneMark_model.108315_t, internal, 2327, 2339
-recovered GeneMark_model.108315_t, internal, 2528, 2540
-recovered GeneMark_model.108315_t, internal, 2939, 2945
-recovered GeneMark_model.108315_t, internal, 3053, 3061
-recovered GeneMark_model.108315_t, internal, 3094, 3114
-recovered GeneMark_model.108315_t, internal, 3172, 3239
-recovered GeneMark_model.108315_t, internal, 3779, 3873
-recovered GeneMark_model.108315_t, internal, 4384, 4443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41347.t1
Couldn't classify 2518, 2646
Sorry, prediction snap_scaffold_752-snap.2-T1 fails validation.
(ATG)	 AT	627-630	GT	GAG
(AAA)	 AG	1650-1799	GT	CTG
(TCC)	 AG	2406-2512	GT	ACG
(TCC)	 AG	2518-2646	GT	GGG
-recovered snap_scaffold_752-snap.2-T1, initial, 627, 630
-recovered snap_scaffold_752-snap.2-T1, internal, 1650, 1799
-recovered snap_scaffold_752-snap.2-T1, internal, 2406, 2512
-recovered snap_scaffold_752-snap.2-T1, internal, 2518, 2646
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.108314_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2198, rend_intergenic: 2026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4671
-exon list size: 58


building trellis

1.7    
3.3    
5.0    
6.7    
8.3    
10.0    
11.7    
13.3    
15.0    
16.7    
18.3    
20.0    
21.7    
23.3    
25.0    
26.7    
28.3    
30.0    
31.7    
33.3    
35.0    
36.7    
38.3    
40.0    
41.7    
43.3    
45.0    
46.7    
48.3    
50.0    
51.7    
53.3    
55.0    
56.7    
58.3    
60.0    
61.7    
63.3    
65.0    
66.7    
68.3    
70.0    
71.7    
73.3    
75.0    
76.7    
78.3    
80.0    
81.7    
83.3    
85.0    
86.7    
88.3    
90.0    
91.7    
93.3    
95.0    
96.7    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2198, rend_intergenic: 2026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support