-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_750

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 255
Sorry, prediction GeneMark_model.108306_t fails validation.
(TGC)	 AG	133-255	GT	AGG
(TGT)	 AG	403-540	GG	GAG
-recovered GeneMark_model.108306_t, terminal, 403, 540
-recovered GeneMark_model.108306_t, internal, 133, 255
Couldn't classify 138, 255
Couldn't classify 1943, 2737
Sorry, prediction snap_scaffold_750-snap.1-T1 fails validation.
(GAT)	 AG	138-255	GT	AGG
(TGT)	 AG	403-536	GT	GGG
(GCT)	 AG	1018-1167	GT	GGG
(AGA)	 AG	1173-1463	GT	GAG
(AGA)	 AG	1943-2737	GT	TTG
-recovered snap_scaffold_750-snap.1-T1, internal, 138, 255
-recovered snap_scaffold_750-snap.1-T1, internal, 403, 536
-recovered snap_scaffold_750-snap.1-T1, internal, 1018, 1167
-recovered snap_scaffold_750-snap.1-T1, internal, 1173, 1463
-recovered snap_scaffold_750-snap.1-T1, internal, 1943, 2737
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.108308_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 959, 1080
Sorry, prediction GlimmerHMM_glimmerT_62198-T1 fails validation.
(AGT)	 AG	959-1080	GT	AGG
(CCC)	 AG	3143-3190	GA	GAG
-recovered GlimmerHMM_glimmerT_62198-T1, terminal, 3143, 3190
-recovered GlimmerHMM_glimmerT_62198-T1, internal, 959, 1080
Couldn't classify 959, 1080
Couldn't classify 3560, 3813
Sorry, prediction snap_scaffold_750-snap.2-T1 fails validation.
(AGT)	 AG	959-1080	GT	AGG
(GGA)	 AG	3560-3813	GT	AGG
-recovered snap_scaffold_750-snap.2-T1, internal, 959, 1080
-recovered snap_scaffold_750-snap.2-T1, internal, 3560, 3813
Valid prediction for Augustus_model.g41345.t1
Couldn't classify 959, 1080
Sorry, prediction GeneMark_model.108309_t fails validation.
(AGT)	 AG	959-1080	GT	AGG
(CCA)	 AG	1240-1248	CA	AAC
-recovered GeneMark_model.108309_t, terminal, 1240, 1248
-recovered GeneMark_model.108309_t, internal, 959, 1080
Valid prediction for GeneMark_model.108307_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2737, rend_intergenic: 864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4676
-exon list size: 50


building trellis

1.9    
3.8    
5.8    
7.7    
9.6    
11.5    
13.5    
15.4    
17.3    
19.2    
21.2    
23.1    
25.0    
26.9    
28.8    
30.8    
32.7    
34.6    
36.5    
38.5    
40.4    
42.3    
44.2    
46.2    
48.1    
50.0    
51.9    
53.8    
55.8    
57.7    
59.6    
61.5    
63.5    
65.4    
67.3    
69.2    
71.2    
73.1    
75.0    
76.9    
78.8    
80.8    
82.7    
84.6    
86.5    
88.5    
90.4    
92.3    
94.2    
96.2    
98.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2737, rend_intergenic: 864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support