-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_75

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 23216, 23247
Sorry, prediction GeneMark_model.106425_t fails validation.
(ATG)	 AG	22748-22815	GT	ACG
(CGT)	 AG	23035-23178	GT	AAG
(AGG)	 AG	23216-23247	GT	AGG
-recovered GeneMark_model.106425_t, initial, 22748, 22815
-recovered GeneMark_model.106425_t, internal, 22748, 22815
-recovered GeneMark_model.106425_t, internal, 23035, 23178
-recovered GeneMark_model.106425_t, internal, 23216, 23247
Couldn't classify 23035, 23247
Sorry, prediction GlimmerHMM_glimmerT_61204-T1 fails validation.
(ATG)	 AC	18259-18316	GT	AAG
(TCA)	 AG	19117-19271	GT	AGG
(GTG)	 AG	21035-21091	GT	TGG
(GGT)	 AG	21301-21372	GT	AGG
(TCT)	 AG	22724-22815	GT	ACG
(CGT)	 AG	23035-23247	GT	AGG
-recovered GlimmerHMM_glimmerT_61204-T1, initial, 18259, 18316
-recovered GlimmerHMM_glimmerT_61204-T1, internal, 19117, 19271
-recovered GlimmerHMM_glimmerT_61204-T1, internal, 21035, 21091
-recovered GlimmerHMM_glimmerT_61204-T1, internal, 21301, 21372
-recovered GlimmerHMM_glimmerT_61204-T1, internal, 22724, 22815
-recovered GlimmerHMM_glimmerT_61204-T1, internal, 23035, 23247
Couldn't classify 23035, 23247
Sorry, prediction snap_scaffold_75-snap.5-T1 fails validation.
(ATG)	 TG	20485-20522	GT	GCG
(GGC)	 AG	20886-20946	GT	GTG
(GTG)	 AG	21035-21091	GT	TGG
(GGT)	 AG	21301-21372	GT	AGG
(TCT)	 AG	22724-22815	GT	ACG
(CGT)	 AG	23035-23247	GT	AGG
-recovered snap_scaffold_75-snap.5-T1, initial, 20485, 20522
-recovered snap_scaffold_75-snap.5-T1, internal, 20886, 20946
-recovered snap_scaffold_75-snap.5-T1, internal, 21035, 21091
-recovered snap_scaffold_75-snap.5-T1, internal, 21301, 21372
-recovered snap_scaffold_75-snap.5-T1, internal, 22724, 22815
-recovered snap_scaffold_75-snap.5-T1, internal, 23035, 23247
Couldn't classify 6749, 6836
Sorry, prediction GeneMark_model.106421_t fails validation.
(CAA)	 AG	6749-6836	GT	TGG
(GCG)	 AG	6907-6948	AT	AGA
-recovered GeneMark_model.106421_t, terminal, 6907, 6948
-recovered GeneMark_model.106421_t, internal, 6749, 6836
Valid prediction for GlimmerHMM_glimmerT_61199-T1
Valid prediction for snap_scaffold_75-snap.2-T1
Couldn't classify 23035, 23247
Sorry, prediction Augustus_model.g40714.t1 fails validation.
(ATG)	 TC	19119-19271	GT	AGG
(GTG)	 AG	21035-21091	GT	TGG
(GGT)	 AG	21301-21372	GT	AGG
(TCT)	 AG	22724-22815	GT	ACG
(CGT)	 AG	23035-23247	GT	AGG
-recovered Augustus_model.g40714.t1, initial, 19119, 19271
-recovered Augustus_model.g40714.t1, internal, 21035, 21091
-recovered Augustus_model.g40714.t1, internal, 21301, 21372
-recovered Augustus_model.g40714.t1, internal, 22724, 22815
-recovered Augustus_model.g40714.t1, internal, 23035, 23247

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61200-T1
Valid prediction for Augustus_model.g40713.t1
Valid prediction for GeneMark_model.106424_t
Valid prediction for snap_scaffold_75-snap.1-T1
Valid prediction for snap_scaffold_75-snap.3-T1
Couldn't classify 435, 577
Sorry, prediction snap_scaffold_75-snap.4-T1 fails validation.
(AGA)	 AG	435-577	GT	TGG
(TCT)	 AG	2670-2713	GT	AGG
(ATG)	 AG	3249-3274	AG	AAA
-recovered snap_scaffold_75-snap.4-T1, terminal, 3249, 3274
-recovered snap_scaffold_75-snap.4-T1, internal, 435, 577
-recovered snap_scaffold_75-snap.4-T1, internal, 2670, 2713
Valid prediction for GlimmerHMM_glimmerT_61203-T1
Valid prediction for GeneMark_model.106422_t
Valid prediction for GeneMark_model.106423_t
Valid prediction for Augustus_model.g40712.t1
Valid prediction for GlimmerHMM_glimmerT_61202-T1
Valid prediction for GlimmerHMM_glimmerT_61201-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16252, rend_intergenic: 13133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23143, rend_intergenic: 20485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 23577
-exon list size: 108


building trellis

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71.8    
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77.3    
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81.8    
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89.1    
90.0    
90.9    
91.8    
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94.5    
95.5    
96.4    
97.3    
98.2    
99.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 16252, rend_intergenic: 13133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23143, rend_intergenic: 20485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support