-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_749

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108304_t
Couldn't classify 2364, 2397
Couldn't classify 4072, 4278
Sorry, prediction snap_scaffold_749-snap.2-T1 fails validation.
(CTC)	 AG	2364-2397	GT	AGG
(GTA)	 AG	2537-2641	GT	TGG
(AGT)	 AG	3456-3623	GT	GGG
(GCG)	 AG	3747-3827	GT	TAG
(CCT)	 AG	3852-3896	GT	CGG
(GGG)	 AG	3931-4041	GT	TGG
(TCA)	 AG	4072-4278	GT	TGG
-recovered snap_scaffold_749-snap.2-T1, internal, 2364, 2397
-recovered snap_scaffold_749-snap.2-T1, internal, 2537, 2641
-recovered snap_scaffold_749-snap.2-T1, internal, 3456, 3623
-recovered snap_scaffold_749-snap.2-T1, internal, 3747, 3827
-recovered snap_scaffold_749-snap.2-T1, internal, 3852, 3896
-recovered snap_scaffold_749-snap.2-T1, internal, 3931, 4041
-recovered snap_scaffold_749-snap.2-T1, internal, 4072, 4278

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 18, 165
Sorry, prediction GeneMark_model.108305_t fails validation.
(ATC)	 AG	18-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1215	GA	GAG
-recovered GeneMark_model.108305_t, terminal, 1066, 1215
-recovered GeneMark_model.108305_t, internal, 18, 165
-recovered GeneMark_model.108305_t, internal, 352, 924
Couldn't classify 3983, 4100
Sorry, prediction snap_scaffold_749-snap.1-T1 fails validation.
(ATG)	 GG	70-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1174	GT	CGG
(GCC)	 AG	2004-2122	GT	AGG
(GAC)	 AG	2236-2367	GT	TGG
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4100	GT	TGG
-recovered snap_scaffold_749-snap.1-T1, initial, 70, 165
-recovered snap_scaffold_749-snap.1-T1, internal, 352, 924
-recovered snap_scaffold_749-snap.1-T1, internal, 1066, 1174
-recovered snap_scaffold_749-snap.1-T1, internal, 2004, 2122
-recovered snap_scaffold_749-snap.1-T1, internal, 2236, 2367
-recovered snap_scaffold_749-snap.1-T1, internal, 3076, 3189
-recovered snap_scaffold_749-snap.1-T1, internal, 3570, 3654
-recovered snap_scaffold_749-snap.1-T1, internal, 3983, 4100
Couldn't classify 13, 165
Couldn't classify 1066, 1209
Sorry, prediction pasa_asmbl_51601.p1 fails validation.
(AAG)	 AC	13-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1209	CT	TGC
-recovered pasa_asmbl_51601.p1, internal, 352, 924
Couldn't classify 3983, 4100
Sorry, prediction Augustus_model.g41344.t1 fails validation.
(ATG)	 GG	70-165	GT	AGG
(GAG)	 AG	352-924	GT	GGG
(ATC)	 AG	1066-1174	GT	CGG
(GCC)	 AG	2004-2122	GT	AGG
(GAC)	 AG	2236-2367	GT	TGG
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4100	GT	TGG
-recovered Augustus_model.g41344.t1, initial, 70, 165
-recovered Augustus_model.g41344.t1, internal, 352, 924
-recovered Augustus_model.g41344.t1, internal, 1066, 1174
-recovered Augustus_model.g41344.t1, internal, 2004, 2122
-recovered Augustus_model.g41344.t1, internal, 2236, 2367
-recovered Augustus_model.g41344.t1, internal, 3076, 3189
-recovered Augustus_model.g41344.t1, internal, 3570, 3654
-recovered Augustus_model.g41344.t1, internal, 3983, 4100
Valid prediction for GlimmerHMM_glimmerT_62197-T1
Couldn't classify 3983, 4223
Sorry, prediction GeneMark_model.108303_t fails validation.
(ATG)	 CT	2173-2181	GT	TGG
(GAC)	 AG	2236-2367	GT	TGG
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4223	GT	CAG
-recovered GeneMark_model.108303_t, initial, 2173, 2181
-recovered GeneMark_model.108303_t, internal, 2236, 2367
-recovered GeneMark_model.108303_t, internal, 3076, 3189
-recovered GeneMark_model.108303_t, internal, 3570, 3654
-recovered GeneMark_model.108303_t, internal, 3983, 4223
Couldn't classify 3076, 3189
Couldn't classify 3983, 4101
Sorry, prediction pasa_asmbl_51600.p1 fails validation.
(GTG)	 AG	3076-3189	GT	TCG
(GAC)	 AG	3570-3654	GT	AGG
(GAA)	 AG	3983-4101	TA	GGT
-recovered pasa_asmbl_51600.p1, internal, 3076, 3189
-recovered pasa_asmbl_51600.p1, internal, 3570, 3654
Valid prediction for GlimmerHMM_glimmerT_62196-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4613, rend_intergenic: 2364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4682
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4613, rend_intergenic: 2364  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support