-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_748

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3835, 3936
Sorry, prediction GlimmerHMM_glimmerT_62195-T1 fails validation.
(ATG)	 CC	2244-2257	GT	ACG
(TCC)	 AG	3835-3936	GT	AGG
-recovered GlimmerHMM_glimmerT_62195-T1, initial, 2244, 2257
-recovered GlimmerHMM_glimmerT_62195-T1, internal, 3835, 3936

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 396, 518
Couldn't classify 4556, 4634
Sorry, prediction GeneMark_model.108302_t fails validation.
(AGA)	 AG	396-518	GT	CGG
(TGA)	 AG	544-624	GT	GAG
(AGA)	 AG	683-697	GT	CCG
(GAG)	 AG	724-734	GT	GAG
(GGA)	 AG	764-836	GT	GAG
(AGG)	 AG	884-960	GT	CTG
(ACG)	 AG	2840-2916	GT	AGG
(CTG)	 AG	4274-4449	GT	AGG
(GTT)	 AG	4556-4634	GT	GGG
-recovered GeneMark_model.108302_t, internal, 396, 518
-recovered GeneMark_model.108302_t, internal, 544, 624
-recovered GeneMark_model.108302_t, internal, 683, 697
-recovered GeneMark_model.108302_t, internal, 724, 734
-recovered GeneMark_model.108302_t, internal, 764, 836
-recovered GeneMark_model.108302_t, internal, 884, 960
-recovered GeneMark_model.108302_t, internal, 2840, 2916
-recovered GeneMark_model.108302_t, internal, 4274, 4449
-recovered GeneMark_model.108302_t, internal, 4556, 4634
Couldn't classify 4550, 4634
Sorry, prediction snap_scaffold_748-snap.1-T1 fails validation.
(ATG)	 AC	343-518	GT	CGG
(GGA)	 AG	764-856	GT	GGG
(GTA)	 AG	2799-2916	GT	AGG
(CTG)	 AG	4274-4449	GT	AGG
(GAA)	 AG	4550-4634	GT	GGG
-recovered snap_scaffold_748-snap.1-T1, initial, 343, 518
-recovered snap_scaffold_748-snap.1-T1, internal, 764, 856
-recovered snap_scaffold_748-snap.1-T1, internal, 2799, 2916
-recovered snap_scaffold_748-snap.1-T1, internal, 4274, 4449
-recovered snap_scaffold_748-snap.1-T1, internal, 4550, 4634
Couldn't classify 4550, 4634
Sorry, prediction Augustus_model.g41343.t1 fails validation.
(ATG)	 CC	1533-1549	GT	CTG
(GTA)	 AG	2799-2916	GT	AGG
(CTG)	 AG	4274-4449	GT	AGG
(GAA)	 AG	4550-4634	GT	GGG
-recovered Augustus_model.g41343.t1, initial, 1533, 1549
-recovered Augustus_model.g41343.t1, internal, 2799, 2916
-recovered Augustus_model.g41343.t1, internal, 4274, 4449
-recovered Augustus_model.g41343.t1, internal, 4550, 4634

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4686
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support