-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_744

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 328, 430
Sorry, prediction Augustus_model.g41339.t1 fails validation.
(AGG)	 AG	328-430	GT	CTG
(TGC)	 AG	917-1118	GC	GAG
-recovered Augustus_model.g41339.t1, terminal, 917, 1118
-recovered Augustus_model.g41339.t1, internal, 328, 430
-recovered Augustus_model.g41339.t1, internal, 917, 1118
Valid prediction for GlimmerHMM_glimmerT_62186-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62186-T1 917-1118-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_744-snap.2-T1
add_exon() Sorry, snap_scaffold_744-snap.2-T1 2496-2872-terminal-1 is invalid.
Valid prediction for GeneMark_model.108296_t
Valid prediction for GlimmerHMM_glimmerT_62187-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62187-T1 2496-2872-terminal-1 is invalid.
Valid prediction for snap_scaffold_744-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4694
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support