-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_742

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108292_t
Couldn't classify 4487, 4531
Sorry, prediction GeneMark_model.108294_t fails validation.
(ATG)	 GA	4167-4210	GT	GAG
(GGA)	 AG	4253-4309	GT	GAG
(GAT)	 AG	4338-4349	GT	GAG
(GAC)	 AG	4487-4531	GT	AGG
-recovered GeneMark_model.108294_t, initial, 4167, 4210
-recovered GeneMark_model.108294_t, internal, 4253, 4309
-recovered GeneMark_model.108294_t, internal, 4338, 4349
-recovered GeneMark_model.108294_t, internal, 4487, 4531
Couldn't classify 2497, 2959
Sorry, prediction snap_scaffold_742-snap.1-T1 fails validation.
(GCC)	 AG	2497-2959	GT	GGG
-recovered snap_scaffold_742-snap.1-T1, internal, 2497, 2959

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108293_t
Couldn't classify 870, 1005
Sorry, prediction Augustus_model.g41337.t1 fails validation.
(GGA)	 AG	870-1005	GT	AGG
(GAG)	 AG	2197-2280	GT	AAG
-recovered Augustus_model.g41337.t1, terminal, 2197, 2280
-recovered Augustus_model.g41337.t1, internal, 870, 1005
-recovered Augustus_model.g41337.t1, internal, 2197, 2280

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4699
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support