-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_741

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62183-T1
Couldn't classify 4511, 4683
Sorry, prediction GeneMark_model.108291_t fails validation.
(ATG)	 GC	3406-3567	GT	CTG
(ATT)	 AG	4511-4683	GC	GTG
-recovered GeneMark_model.108291_t, initial, 3406, 3567
-recovered GeneMark_model.108291_t, internal, 4511, 4683
Couldn't classify 4511, 4609
Sorry, prediction GlimmerHMM_glimmerT_62184-T1 fails validation.
(ATG)	 CA	871-923	GT	GAG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4609	GT	CTG
-recovered GlimmerHMM_glimmerT_62184-T1, initial, 871, 923
-recovered GlimmerHMM_glimmerT_62184-T1, internal, 2326, 2484
-recovered GlimmerHMM_glimmerT_62184-T1, internal, 3387, 3567
-recovered GlimmerHMM_glimmerT_62184-T1, internal, 4511, 4609
Couldn't classify 4511, 4703
Sorry, prediction Augustus_model.g41336.t1 fails validation.
(ATG)	 GG	465-544	GT	AGG
(GTA)	 AG	783-845	GT	TTG
(ATT)	 AG	1658-1693	GT	AGG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4703		CA
-recovered Augustus_model.g41336.t1, initial, 465, 544
add_exon() Sorry, Augustus_model.g41336.t1 1658-1693-terminal-1 is invalid.
-recovered Augustus_model.g41336.t1, terminal, 1658, 1693
-recovered Augustus_model.g41336.t1, internal, 783, 845
-recovered Augustus_model.g41336.t1, internal, 1658, 1693
-recovered Augustus_model.g41336.t1, internal, 2326, 2484
-recovered Augustus_model.g41336.t1, internal, 3387, 3567
Couldn't classify 4511, 4702
Sorry, prediction pasa_asmbl_51597.p2 fails validation.
(ATG)	 GC	3406-3567	GT	CTG
(ATT)	 AG	4511-4702	A	CCA
-recovered pasa_asmbl_51597.p2, initial, 3406, 3567
Couldn't classify 4511, 4681
Sorry, prediction snap_scaffold_741-snap.1-T1 fails validation.
(ATG)	 CA	871-919	GT	CAG
(ATA)	 AG	1666-1693	GT	AGG
(TGG)	 AG	2326-2484	GT	GTG
(AGA)	 AG	3387-3567	GT	CTG
(ATT)	 AG	4511-4681	GT	ACG
-recovered snap_scaffold_741-snap.1-T1, initial, 871, 919
add_exon() Sorry, snap_scaffold_741-snap.1-T1 1666-1693-terminal-3 is invalid.
-recovered snap_scaffold_741-snap.1-T1, terminal, 1666, 1693
-recovered snap_scaffold_741-snap.1-T1, internal, 1666, 1693
-recovered snap_scaffold_741-snap.1-T1, internal, 2326, 2484
-recovered snap_scaffold_741-snap.1-T1, internal, 3387, 3567
-recovered snap_scaffold_741-snap.1-T1, internal, 4511, 4681

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_741-snap.2-T1
Valid prediction for GeneMark_model.108290_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4681, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4703
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4681, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support