-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_740

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1637, 1821
Couldn't classify 4596, 4690
Sorry, prediction snap_scaffold_740-snap.1-T1 fails validation.
(AGT)	 AG	1637-1821	GT	GAG
(GGA)	 AG	2807-2989	GT	GTG
(AGA)	 AG	2995-3103	GT	AGG
(GGT)	 AG	3161-3254	GT	GGG
(GAT)	 AG	4596-4690	GT	GGG
-recovered snap_scaffold_740-snap.1-T1, internal, 1637, 1821
-recovered snap_scaffold_740-snap.1-T1, internal, 2807, 2989
-recovered snap_scaffold_740-snap.1-T1, internal, 2995, 3103
-recovered snap_scaffold_740-snap.1-T1, internal, 3161, 3254
-recovered snap_scaffold_740-snap.1-T1, internal, 4596, 4690
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 4624, 4690
Sorry, prediction GeneMark_model.108289_t fails validation.
(ATG)	 CC	2787-2920	GT	GCG
(AGA)	 AG	2943-2954	GT	AGG
(AGG)	 AG	2977-3084	GT	CAG
(GCG)	 AG	3176-3208	GT	GGG
(GAG)	 AG	3237-3254	GT	GGG
(GGG)	 AG	3278-3322	GT	ATG
(ACA)	 AG	3405-3524	GC	GCG
(GGA)	 AG	3548-3646	GT	AAG
(AGA)	 AG	3824-3940	GC	GGG
(AGA)	 AG	3962-3970	GT	AAG
(ACA)	 AG	4002-4010	GT	GAG
(TTA)	 AG	4034-4081	GT	TTG
(GAG)	 AG	4624-4690	GT	GGG
-recovered GeneMark_model.108289_t, initial, 2787, 2920
-recovered GeneMark_model.108289_t, internal, 2943, 2954
-recovered GeneMark_model.108289_t, internal, 2977, 3084
-recovered GeneMark_model.108289_t, internal, 3176, 3208
-recovered GeneMark_model.108289_t, internal, 3237, 3254
-recovered GeneMark_model.108289_t, internal, 3278, 3322
-recovered GeneMark_model.108289_t, internal, 3405, 3524
-recovered GeneMark_model.108289_t, internal, 3548, 3646
-recovered GeneMark_model.108289_t, internal, 3824, 3940
-recovered GeneMark_model.108289_t, internal, 3962, 3970
-recovered GeneMark_model.108289_t, internal, 4002, 4010
-recovered GeneMark_model.108289_t, internal, 4034, 4081
-recovered GeneMark_model.108289_t, internal, 4624, 4690
Valid prediction for GlimmerHMM_glimmerT_62182-T1
Couldn't classify 38, 82
Sorry, prediction GeneMark_model.108287_t fails validation.
(AGA)	 AG	38-82	GT	CAG
(TGA)	 AG	108-226	GT	CAG
(GGA)	 AG	244-250	GT	CAG
(GGA)	 AG	272-298	GT	CAG
(GCA)	 AG	320-346	GT	CAG
(GCA)	 AG	368-394	GT	CAG
(GTT)	 AG	416-433	GT	ATG
(GAG)	 AG	1663-1821	GT	GAG
(GAT)	 AG	1854-1994	GT	CAG
(GAA)	 AG	2014-2047	TC	AGT
-recovered GeneMark_model.108287_t, terminal, 2014, 2047
-recovered GeneMark_model.108287_t, internal, 38, 82
-recovered GeneMark_model.108287_t, internal, 108, 226
-recovered GeneMark_model.108287_t, internal, 244, 250
-recovered GeneMark_model.108287_t, internal, 272, 298
-recovered GeneMark_model.108287_t, internal, 320, 346
-recovered GeneMark_model.108287_t, internal, 368, 394
-recovered GeneMark_model.108287_t, internal, 416, 433
-recovered GeneMark_model.108287_t, internal, 1663, 1821
-recovered GeneMark_model.108287_t, internal, 1854, 1994

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108288_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4706
-exon list size: 63


building trellis

1.5    
3.1    
4.6    
6.2    
7.7    
9.2    
10.8    
12.3    
13.8    
15.4    
16.9    
18.5    
20.0    
21.5    
23.1    
24.6    
26.2    
27.7    
29.2    
30.8    
32.3    
33.8    
35.4    
36.9    
38.5    
40.0    
41.5    
43.1    
44.6    
46.2    
47.7    
49.2    
50.8    
52.3    
53.8    
55.4    
56.9    
58.5    
60.0    
61.5    
63.1    
64.6    
66.2    
67.7    
69.2    
70.8    
72.3    
73.8    
75.4    
76.9    
78.5    
80.0    
81.5    
83.1    
84.6    
86.2    
87.7    
89.2    
90.8    
92.3    
93.8    
95.4    
96.9    
98.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support