-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_74

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g40710.t1
Valid prediction for GlimmerHMM_glimmerT_61196-T1
Valid prediction for GlimmerHMM_glimmerT_61194-T1
Valid prediction for GeneMark_model.106419_t
Valid prediction for snap_scaffold_74-snap.2-T1
Valid prediction for Augustus_model.g40711.t1
Couldn't classify 22197, 22327
Sorry, prediction snap_scaffold_74-snap.5-T1 fails validation.
(ATG)	 AC	20653-20660	GT	GTG
(GGT)	 AG	22044-22126	GT	AGG
(AGT)	 AG	22197-22327	GT	AGG
-recovered snap_scaffold_74-snap.5-T1, initial, 20653, 20660
-recovered snap_scaffold_74-snap.5-T1, internal, 22044, 22126
-recovered snap_scaffold_74-snap.5-T1, internal, 22197, 22327
Valid prediction for GeneMark_model.106416_t
Valid prediction for GlimmerHMM_glimmerT_61197-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106420_t
Valid prediction for GeneMark_model.106415_t
Valid prediction for GlimmerHMM_glimmerT_61198-T1
Valid prediction for snap_scaffold_74-snap.4-T1
Valid prediction for GeneMark_model.106417_t
Valid prediction for GlimmerHMM_glimmerT_61195-T1
Valid prediction for snap_scaffold_74-snap.3-T1
Valid prediction for snap_scaffold_74-snap.6-T1
Valid prediction for snap_scaffold_74-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10010, rend_intergenic: 7443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20616, rend_intergenic: 10429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22236, rend_intergenic: 20653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22327, rend_intergenic: 22259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 23640
-exon list size: 116


building trellis

0.8    
1.7    
2.5    
3.4    
4.2    
5.1    
5.9    
6.8    
7.6    
8.5    
9.3    
10.2    
11.0    
11.9    
12.7    
13.6    
14.4    
15.3    
16.1    
16.9    
17.8    
18.6    
19.5    
20.3    
21.2    
22.0    
22.9    
23.7    
24.6    
25.4    
26.3    
27.1    
28.0    
28.8    
29.7    
30.5    
31.4    
32.2    
33.1    
33.9    
34.7    
35.6    
36.4    
37.3    
38.1    
39.0    
39.8    
40.7    
41.5    
42.4    
43.2    
44.1    
44.9    
45.8    
46.6    
47.5    
48.3    
49.2    
50.0    
50.8    
51.7    
52.5    
53.4    
54.2    
55.1    
55.9    
56.8    
57.6    
58.5    
59.3    
60.2    
61.0    
61.9    
62.7    
63.6    
64.4    
65.3    
66.1    
66.9    
67.8    
68.6    
69.5    
70.3    
71.2    
72.0    
72.9    
73.7    
74.6    
75.4    
76.3    
77.1    
78.0    
78.8    
79.7    
80.5    
81.4    
82.2    
83.1    
83.9    
84.7    
85.6    
86.4    
87.3    
88.1    
89.0    
89.8    
90.7    
91.5    
92.4    
93.2    
94.1    
94.9    
95.8    
96.6    
97.5    
98.3    
99.2    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 10010, rend_intergenic: 7443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20616, rend_intergenic: 10429  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22236, rend_intergenic: 20653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22327, rend_intergenic: 22259  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support