-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_738

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 771, 791
Couldn't classify 4685, 4717
Sorry, prediction GeneMark_model.108284_t fails validation.
(GGA)	 AG	771-791	GT	GAG
(AGA)	 AG	815-850	GT	ATG
(GAT)	 AG	1322-1348	GT	AGG
(AGA)	 AG	1374-1382	GT	AGG
(GGA)	 AG	1403-1474	GT	GAG
(AGA)	 AG	1514-1519	GT	ACG
(AGG)	 AG	2864-3052	GT	GAG
(AGA)	 AG	3090-3095	GC	GGG
(AAG)	 AG	3118-3165	GT	GAG
(AGA)	 AG	4219-4227	GT	GAG
(TGA)	 AG	4265-4275	GT	GAG
(ATA)	 AG	4327-4333	GT	GAG
(TGT)	 AG	4369-4377	GT	GTG
(AGT)	 AG	4401-4409	GT	GTG
(AGG)	 AG	4433-4447	GT	GTG
(AGT)	 AG	4473-4493	GT	GAG
(TGT)	 AG	4515-4523	GT	GTG
(AGT)	 AG	4583-4591	GT	GAG
(TGA)	 AG	4635-4649	GT	GTG
(AGA)	 AG	4685-4717	GT	GAG
-recovered GeneMark_model.108284_t, terminal, 3118, 3165
-recovered GeneMark_model.108284_t, internal, 771, 791
-recovered GeneMark_model.108284_t, internal, 815, 850
-recovered GeneMark_model.108284_t, internal, 1322, 1348
-recovered GeneMark_model.108284_t, internal, 1374, 1382
-recovered GeneMark_model.108284_t, internal, 1403, 1474
-recovered GeneMark_model.108284_t, internal, 1514, 1519
-recovered GeneMark_model.108284_t, internal, 2864, 3052
-recovered GeneMark_model.108284_t, internal, 3090, 3095
-recovered GeneMark_model.108284_t, internal, 3118, 3165
-recovered GeneMark_model.108284_t, internal, 4219, 4227
-recovered GeneMark_model.108284_t, internal, 4265, 4275
-recovered GeneMark_model.108284_t, internal, 4327, 4333
-recovered GeneMark_model.108284_t, internal, 4369, 4377
-recovered GeneMark_model.108284_t, internal, 4401, 4409
-recovered GeneMark_model.108284_t, internal, 4433, 4447
-recovered GeneMark_model.108284_t, internal, 4473, 4493
-recovered GeneMark_model.108284_t, internal, 4515, 4523
-recovered GeneMark_model.108284_t, internal, 4583, 4591
-recovered GeneMark_model.108284_t, internal, 4635, 4649
-recovered GeneMark_model.108284_t, internal, 4685, 4717

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4725
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support