-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_736

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62178-T1
Couldn't classify 334, 450
Sorry, prediction pasa_asmbl_51592.p1 fails validation.
(GAT)	 AG	334-450	GT	AGG
(ATG)	 AG	765-911	GT	AGG
(GCA)	 AG	1452-1880	AC	AGA
-recovered pasa_asmbl_51592.p1, initial, 765, 911
-recovered pasa_asmbl_51592.p1, terminal, 1452, 1880
-recovered pasa_asmbl_51592.p1, internal, 334, 450
-recovered pasa_asmbl_51592.p1, internal, 765, 911
Couldn't classify 4317, 4325
Sorry, prediction GeneMark_model.108282_t fails validation.
(ATG)	 GA	4088-4116	GT	GAG
(GAG)	 AG	4147-4188	GT	AGG
(GAG)	 AG	4209-4226	GC	GAG
(GGG)	 AG	4249-4293	GT	AGG
(AGG)	 AG	4317-4325	GT	GAG
-recovered GeneMark_model.108282_t, initial, 4088, 4116
-recovered GeneMark_model.108282_t, internal, 4147, 4188
-recovered GeneMark_model.108282_t, internal, 4209, 4226
-recovered GeneMark_model.108282_t, internal, 4249, 4293
-recovered GeneMark_model.108282_t, internal, 4317, 4325
Couldn't classify 334, 450
Sorry, prediction snap_scaffold_736-snap.1-T1 fails validation.
(GAT)	 AG	334-450	GT	AGG
(ATG)	 AG	765-911	GT	AGG
(GCA)	 AG	1452-1855	GT	ATG
(ACG)	 AG	3930-4020	CA	AGC
-recovered snap_scaffold_736-snap.1-T1, initial, 765, 911
-recovered snap_scaffold_736-snap.1-T1, terminal, 3930, 4020
-recovered snap_scaffold_736-snap.1-T1, internal, 334, 450
-recovered snap_scaffold_736-snap.1-T1, internal, 765, 911
-recovered snap_scaffold_736-snap.1-T1, internal, 1452, 1855
Couldn't classify 334, 450
Sorry, prediction GeneMark_model.108280_t fails validation.
(GAT)	 AG	334-450	GT	AGG
(ATG)	 AG	765-911	GT	AGG
(GCA)	 AG	1452-1825	GT	GAG
(ACG)	 AG	3562-3691	TG	AGT
-recovered GeneMark_model.108280_t, initial, 765, 911
-recovered GeneMark_model.108280_t, terminal, 3562, 3691
-recovered GeneMark_model.108280_t, internal, 334, 450
-recovered GeneMark_model.108280_t, internal, 765, 911
-recovered GeneMark_model.108280_t, internal, 1452, 1825
Valid prediction for Augustus_model.g41332.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41333.t1
add_exon() Sorry, Augustus_model.g41333.t1 235-386-terminal-1 is invalid.
Valid prediction for GeneMark_model.108281_t
Valid prediction for GlimmerHMM_glimmerT_62179-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62179-T1 235-386-terminal-1 is invalid.
Couldn't classify 235, 362
Couldn't classify 3152, 3247
Sorry, prediction snap_scaffold_736-snap.2-T1 fails validation.
(CAT)	 AG	235-362	GT	GAG
(CGA)	 AG	2973-3049	GT	CGG
(CCC)	 AG	3152-3247	GT	TGG
-recovered snap_scaffold_736-snap.2-T1, internal, 235, 362
-recovered snap_scaffold_736-snap.2-T1, internal, 2973, 3049
-recovered snap_scaffold_736-snap.2-T1, internal, 3152, 3247

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4020, rend_intergenic: 1494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4740
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4020, rend_intergenic: 1494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support