-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_733

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4642, 4683
Sorry, prediction GeneMark_model.108277_t fails validation.
(ATG)	 GG	4202-4272	GT	ATG
(GGT)	 AG	4392-4442	GT	AGG
(AGA)	 AG	4466-4618	GT	AGG
(AGA)	 AG	4642-4683	GT	GAG
-recovered GeneMark_model.108277_t, initial, 4202, 4272
-recovered GeneMark_model.108277_t, internal, 4392, 4442
-recovered GeneMark_model.108277_t, internal, 4466, 4618
-recovered GeneMark_model.108277_t, internal, 4642, 4683
Couldn't classify 247, 473
Sorry, prediction snap_scaffold_733-snap.2-T1 fails validation.
(CGT)	 AG	247-473	GT	AGG
(AGC)	 AG	1897-2025	AG	AGA
-recovered snap_scaffold_733-snap.2-T1, terminal, 1897, 2025
-recovered snap_scaffold_733-snap.2-T1, internal, 247, 473
Valid prediction for GeneMark_model.108275_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4411, 4517
Sorry, prediction GeneMark_model.108274_t fails validation.
(ATG)	 GG	3282-3291	GT	AGG
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4517	GT	AAG
-recovered GeneMark_model.108274_t, initial, 3282, 3291
-recovered GeneMark_model.108274_t, internal, 4154, 4227
-recovered GeneMark_model.108274_t, internal, 4411, 4517
Couldn't classify 1083, 1280
Couldn't classify 4411, 4517
Sorry, prediction snap_scaffold_733-snap.1-T1 fails validation.
(TCT)	 AG	1083-1280	GT	AGG
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4517	GT	AAG
-recovered snap_scaffold_733-snap.1-T1, internal, 1083, 1280
-recovered snap_scaffold_733-snap.1-T1, internal, 4154, 4227
-recovered snap_scaffold_733-snap.1-T1, internal, 4411, 4517
Couldn't classify 4411, 4517
Sorry, prediction Augustus_model.g41329.t1 fails validation.
(ATG)	 CC	2544-2619	GT	CGG
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4517	GT	AAG
-recovered Augustus_model.g41329.t1, initial, 2544, 2619
-recovered Augustus_model.g41329.t1, internal, 4154, 4227
-recovered Augustus_model.g41329.t1, internal, 4411, 4517
Valid prediction for GeneMark_model.108276_t
Couldn't classify 4154, 4227
Sorry, prediction GlimmerHMM_glimmerT_62175-T1 fails validation.
(TTG)	 AG	4154-4227	GT	AGG
(ATC)	 AG	4411-4521	GT	AGG
-recovered GlimmerHMM_glimmerT_62175-T1, terminal, 4411, 4521
-recovered GlimmerHMM_glimmerT_62175-T1, internal, 4154, 4227
-recovered GlimmerHMM_glimmerT_62175-T1, internal, 4411, 4521

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3668, rend_intergenic: 247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4750
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 3668, rend_intergenic: 247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support