-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_732

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 706, 765
Sorry, prediction Augustus_model.g41327.t1 fails validation.
(TCT)	 AG	706-765	GT	ATG
(ATT)	 AG	907-1433	AG	AGA
-recovered Augustus_model.g41327.t1, terminal, 907, 1433
-recovered Augustus_model.g41327.t1, internal, 706, 765
Valid prediction for Augustus_model.g41328.t1
Couldn't classify 3679, 4300
Sorry, prediction GeneMark_model.108273_t fails validation.
(ATG)	 AG	3342-3358	GT	GAG
(CGA)	 AG	3679-4300	GT	AGG
-recovered GeneMark_model.108273_t, initial, 3342, 3358
-recovered GeneMark_model.108273_t, internal, 3342, 3358
-recovered GeneMark_model.108273_t, internal, 3679, 4300
Couldn't classify 706, 786
Sorry, prediction snap_scaffold_732-snap.1-T1 fails validation.
(TCT)	 AG	706-786	GT	AGG
(ATT)	 AG	907-1401	GT	TGG
(GGT)	 AG	2181-2293	GT	TGG
(AGA)	 AG	3671-4321	TA	AGT
-recovered snap_scaffold_732-snap.1-T1, terminal, 3671, 4321
-recovered snap_scaffold_732-snap.1-T1, internal, 706, 786
-recovered snap_scaffold_732-snap.1-T1, internal, 907, 1401
-recovered snap_scaffold_732-snap.1-T1, internal, 2181, 2293
Valid prediction for GlimmerHMM_glimmerT_62174-T1
Couldn't classify 3791, 4300
Sorry, prediction pasa_asmbl_51588.p1 fails validation.
(GGT)	 GT	3791-4300	GT	AGG
Couldn't classify 696, 765
Sorry, prediction pasa_asmbl_51586.p1 fails validation.
(GTG)	 GT	696-765	GT	ATG
(ATT)	 AG	907-1433	AG	AGA
-recovered pasa_asmbl_51586.p1, terminal, 907, 1433

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3966, 4043
Sorry, prediction GeneMark_model.108272_t fails validation.
(ATG)	 GG	2715-2737	GT	AGG
(AGA)	 AG	2786-2860	GT	AGG
(AGA)	 AG	3020-3054	GT	AGG
(GAA)	 AG	3360-3478	GT	AGG
(ACA)	 AG	3796-3833	GT	GAG
(ACA)	 AG	3966-4043	GT	CTG
-recovered GeneMark_model.108272_t, initial, 2715, 2737
-recovered GeneMark_model.108272_t, internal, 2786, 2860
-recovered GeneMark_model.108272_t, internal, 3020, 3054
-recovered GeneMark_model.108272_t, internal, 3360, 3478
-recovered GeneMark_model.108272_t, internal, 3796, 3833
-recovered GeneMark_model.108272_t, internal, 3966, 4043
Valid prediction for GlimmerHMM_glimmerT_62173-T1
Couldn't classify 3916, 3993
Sorry, prediction snap_scaffold_732-snap.2-T1 fails validation.
(ATG)	 TC	495-665	GT	AGG
(AGG)	 AG	739-870	GT	GAG
(AGC)	 AG	2506-2643	GT	GGG
(CTG)	 AG	2973-3077	GT	TAG
(CTT)	 AG	3332-3478	GT	AGG
(CTG)	 AG	3916-3993	GT	TGG
-recovered snap_scaffold_732-snap.2-T1, initial, 495, 665
-recovered snap_scaffold_732-snap.2-T1, internal, 739, 870
-recovered snap_scaffold_732-snap.2-T1, internal, 2506, 2643
-recovered snap_scaffold_732-snap.2-T1, internal, 2973, 3077
-recovered snap_scaffold_732-snap.2-T1, internal, 3332, 3478
-recovered snap_scaffold_732-snap.2-T1, internal, 3916, 3993

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4321, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4755
-exon list size: 37


building trellis

2.6    
5.1    
7.7    
10.3    
12.8    
15.4    
17.9    
20.5    
23.1    
25.6    
28.2    
30.8    
33.3    
35.9    
38.5    
41.0    
43.6    
46.2    
48.7    
51.3    
53.8    
56.4    
59.0    
61.5    
64.1    
66.7    
69.2    
71.8    
74.4    
76.9    
79.5    
82.1    
84.6    
87.2    
89.7    
92.3    
94.9    
97.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4321, rend_intergenic: 763  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support