-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_73

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106411_t
Valid prediction for snap_scaffold_73-snap.6-T1
Valid prediction for GeneMark_model.106409_t
Valid prediction for snap_scaffold_73-snap.3-T1
Valid prediction for HiQ_model.g40706.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61191-T1
Valid prediction for snap_scaffold_73-snap.7-T1
Couldn't classify 7417, 7847
Sorry, prediction pasa_asmbl_51581.p1 fails validation.
(ATG)	 GC	6832-6888	GT	AGG
(GGC)	 AG	6999-7050	GT	AGG
(TGG)	 AG	7140-7166	GT	AGG
(TTT)	 AG	7251-7277	GT	AGG
(ATG)	 AG	7417-7847	AA	AGA
-recovered pasa_asmbl_51581.p1, initial, 6832, 6888
-recovered pasa_asmbl_51581.p1, internal, 6999, 7050
-recovered pasa_asmbl_51581.p1, internal, 7140, 7166
-recovered pasa_asmbl_51581.p1, internal, 7251, 7277
Couldn't classify 173, 181
Sorry, prediction GeneMark_model.106414_t fails validation.
(AGA)	 AG	173-181	GT	CGG
(CCT)	 AG	2110-2125	GT	AGG
(GAG)	 AG	2216-2353	GT	AGG
(GAA)	 AG	3041-3078	GT	AGG
(GAT)	 AG	3108-3288	GT	AGG
(AAG)	 AG	3310-3410	GT	ATG
(AGA)	 AG	4574-4600	GT	GAG
(CCT)	 AG	6645-6660	GT	AGG
(GAG)	 AG	6751-6888	GT	AGG
(GGC)	 AG	6999-7050	GT	AGG
(ACA)	 AG	7438-7955	AT	GAA
-recovered GeneMark_model.106414_t, terminal, 7438, 7955
-recovered GeneMark_model.106414_t, internal, 173, 181
-recovered GeneMark_model.106414_t, internal, 2110, 2125
-recovered GeneMark_model.106414_t, internal, 2216, 2353
-recovered GeneMark_model.106414_t, internal, 3041, 3078
-recovered GeneMark_model.106414_t, internal, 3108, 3288
-recovered GeneMark_model.106414_t, internal, 3310, 3410
-recovered GeneMark_model.106414_t, internal, 4574, 4600
-recovered GeneMark_model.106414_t, internal, 6645, 6660
-recovered GeneMark_model.106414_t, internal, 6751, 6888
-recovered GeneMark_model.106414_t, internal, 6999, 7050
Valid prediction for Augustus_model.g40705.t1
Valid prediction for snap_scaffold_73-snap.4-T1
Valid prediction for Augustus_model.g40707.t1
Valid prediction for Augustus_model.g40709.t1
Valid prediction for Augustus_model.g40708.t1
Valid prediction for GlimmerHMM_glimmerT_61192-T1
Valid prediction for GlimmerHMM_glimmerT_61193-T1
Valid prediction for snap_scaffold_73-snap.1-T1
Valid prediction for snap_scaffold_73-snap.2-T1
Valid prediction for pasa_asmbl_51582.p1
Valid prediction for GeneMark_model.106410_t
Valid prediction for GeneMark_model.106408_t
Valid prediction for GeneMark_model.106412_t
Valid prediction for snap_scaffold_73-snap.5-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 24028
-exon list size: 105


building trellis

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43.9    
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52.3    
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55.1    
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57.0    
57.9    
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60.7    
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62.6    
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64.5    
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67.3    
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71.0    
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72.9    
73.8    
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79.4    
80.4    
81.3    
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85.0    
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90.7    
91.6    
92.5    
93.5    
94.4    
95.3    
96.3    
97.2    
98.1    
99.1    
-found 5 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 5 predictions persist after filtering for low support