-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_728

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41324.t1
Couldn't classify 4704, 4762
Sorry, prediction GeneMark_model.108268_t fails validation.
(ATG)	 AG	3880-4259	GT	AGG
(AGG)	 AG	4291-4492	GT	TTG
(GCA)	 AG	4541-4669	GT	TTG
(GAG)	 AG	4704-4762	GC	CCG
-recovered GeneMark_model.108268_t, initial, 3880, 4259
-recovered GeneMark_model.108268_t, internal, 3880, 4259
-recovered GeneMark_model.108268_t, internal, 4291, 4492
-recovered GeneMark_model.108268_t, internal, 4541, 4669
-recovered GeneMark_model.108268_t, internal, 4704, 4762
Valid prediction for snap_scaffold_728-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62170-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62169-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4778
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support