-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_727

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 626, 691
Sorry, prediction snap_scaffold_727-snap.2-T1 fails validation.
(AGC)	 AG	626-691	GT	AGG
(TGA)	 AG	1527-1642	GT	GAG
(GTC)	 AG	4367-4483	GG	GAG
-recovered snap_scaffold_727-snap.2-T1, terminal, 4367, 4483
-recovered snap_scaffold_727-snap.2-T1, internal, 626, 691
-recovered snap_scaffold_727-snap.2-T1, internal, 1527, 1642
Valid prediction for GeneMark_model.108266_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 284, 443
Sorry, prediction GlimmerHMM_glimmerT_62168-T1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3228	AC	AGA
-recovered GlimmerHMM_glimmerT_62168-T1, terminal, 3118, 3228
-recovered GlimmerHMM_glimmerT_62168-T1, internal, 284, 443
-recovered GlimmerHMM_glimmerT_62168-T1, internal, 2788, 2869
Couldn't classify 4737, 4743
Sorry, prediction GeneMark_model.108265_t fails validation.
(ATG)	 TG	4414-4445	GT	AGG
(AAA)	 AG	4504-4512	GT	AGG
(AGG)	 AG	4540-4635	GT	AGG
(AGA)	 AG	4659-4673	GT	AGG
(AGA)	 AG	4737-4743	GT	AGG
-recovered GeneMark_model.108265_t, initial, 4414, 4445
-recovered GeneMark_model.108265_t, internal, 4504, 4512
-recovered GeneMark_model.108265_t, internal, 4540, 4635
-recovered GeneMark_model.108265_t, internal, 4659, 4673
-recovered GeneMark_model.108265_t, internal, 4737, 4743
Couldn't classify 284, 443
Sorry, prediction Augustus_model.g41323.t1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3228	AC	AGA
-recovered Augustus_model.g41323.t1, terminal, 3118, 3228
-recovered Augustus_model.g41323.t1, internal, 284, 443
-recovered Augustus_model.g41323.t1, internal, 2788, 2869
Valid prediction for GeneMark_model.108267_t
add_exon() Sorry, GeneMark_model.108267_t 284-447-terminal-1 is invalid.
Couldn't classify 284, 443
Couldn't classify 4165, 4198
Sorry, prediction snap_scaffold_727-snap.1-T1 fails validation.
(GCT)	 AG	284-443	GT	GGG
(GTG)	 AG	2788-2869	GT	AGG
(ATC)	 AG	3118-3209	GT	AAG
(GTC)	 AG	4165-4198	GT	ACG
-recovered snap_scaffold_727-snap.1-T1, internal, 284, 443
-recovered snap_scaffold_727-snap.1-T1, internal, 2788, 2869
-recovered snap_scaffold_727-snap.1-T1, internal, 3118, 3209
-recovered snap_scaffold_727-snap.1-T1, internal, 4165, 4198

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4500, rend_intergenic: 626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4783
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4500, rend_intergenic: 626  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support