-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_726

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3944, 4009
Sorry, prediction GeneMark_model.108264_t fails validation.
(ATG)	 CC	965-1023	GT	GGG
(AGA)	 AG	1059-1067	GT	GGG
(GGA)	 AG	1097-1129	GT	AGG
(GAT)	 AG	1190-1237	GT	AGG
(GGA)	 AG	1261-1287	GT	GAG
(AGA)	 AG	1315-1338	GT	GGG
(AGG)	 AG	1371-1445	GT	AGG
(GGG)	 AG	1470-1481	GT	GAG
(GAG)	 AG	1511-1519	GT	GAG
(GGA)	 AG	1638-1734	GT	AGG
(GAG)	 AG	2066-2109	GT	TGG
(GCT)	 AG	2217-2333	GT	GAG
(AGG)	 AG	2387-2626	GT	CAG
(AGA)	 AG	3944-4009	GT	TCG
-recovered GeneMark_model.108264_t, initial, 965, 1023
-recovered GeneMark_model.108264_t, internal, 1059, 1067
-recovered GeneMark_model.108264_t, internal, 1097, 1129
-recovered GeneMark_model.108264_t, internal, 1190, 1237
-recovered GeneMark_model.108264_t, internal, 1261, 1287
-recovered GeneMark_model.108264_t, internal, 1315, 1338
-recovered GeneMark_model.108264_t, internal, 1371, 1445
-recovered GeneMark_model.108264_t, internal, 1470, 1481
-recovered GeneMark_model.108264_t, internal, 1511, 1519
-recovered GeneMark_model.108264_t, internal, 1638, 1734
-recovered GeneMark_model.108264_t, internal, 2066, 2109
-recovered GeneMark_model.108264_t, internal, 2217, 2333
-recovered GeneMark_model.108264_t, internal, 2387, 2626
-recovered GeneMark_model.108264_t, internal, 3944, 4009

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 650, 775
Couldn't classify 4470, 4641
Sorry, prediction Augustus_model.g41322.t1 fails validation.
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1826	GT	CTG
(TAC)	 AG	2112-2176	GT	AGG
(TTT)	 AG	2486-2760	GT	AAG
(ACA)	 AG	3771-3912	GT	AGG
(GTC)	 AG	4007-4090	GT	AGG
(GGA)	 AG	4470-4641	GT	GGG
-recovered Augustus_model.g41322.t1, internal, 650, 775
-recovered Augustus_model.g41322.t1, internal, 1724, 1826
-recovered Augustus_model.g41322.t1, internal, 2112, 2176
-recovered Augustus_model.g41322.t1, internal, 2486, 2760
-recovered Augustus_model.g41322.t1, internal, 3771, 3912
-recovered Augustus_model.g41322.t1, internal, 4007, 4090
-recovered Augustus_model.g41322.t1, internal, 4470, 4641
Couldn't classify 650, 775
Couldn't classify 4470, 4769
Sorry, prediction snap_scaffold_726-snap.1-T1 fails validation.
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1852	GT	CTG
(TTT)	 AG	2486-2760	GT	AAG
(ACA)	 AG	3771-3912	GT	AGG
(GTC)	 AG	4007-4090	GT	AGG
(GGA)	 AG	4470-4769	GT	CAG
-recovered snap_scaffold_726-snap.1-T1, internal, 650, 775
-recovered snap_scaffold_726-snap.1-T1, internal, 1724, 1852
-recovered snap_scaffold_726-snap.1-T1, internal, 2486, 2760
-recovered snap_scaffold_726-snap.1-T1, internal, 3771, 3912
-recovered snap_scaffold_726-snap.1-T1, internal, 4007, 4090
-recovered snap_scaffold_726-snap.1-T1, internal, 4470, 4769
Couldn't classify 4752, 4769
Sorry, prediction GeneMark_model.108263_t fails validation.
(ATG)	 CT	3865-3912	GT	AGG
(GTC)	 AG	4007-4090	GT	AGG
(GGA)	 AG	4470-4726	GC	GGG
(GGC)	 AG	4752-4769	GT	CAG
-recovered GeneMark_model.108263_t, initial, 3865, 3912
-recovered GeneMark_model.108263_t, internal, 4007, 4090
-recovered GeneMark_model.108263_t, internal, 4470, 4726
-recovered GeneMark_model.108263_t, internal, 4752, 4769
Valid prediction for GlimmerHMM_glimmerT_62166-T1
Couldn't classify 190, 305
Sorry, prediction GlimmerHMM_glimmerT_62167-T1 fails validation.
(TGA)	 AG	190-305	GT	TGG
(GCA)	 AG	650-775	GT	GTG
(TCC)	 AG	1724-1826	GT	CTG
(TAC)	 AG	2112-2176	GT	AGG
(TTT)	 AG	2486-2764	GA	AGG
-recovered GlimmerHMM_glimmerT_62167-T1, terminal, 2486, 2764
-recovered GlimmerHMM_glimmerT_62167-T1, internal, 190, 305
-recovered GlimmerHMM_glimmerT_62167-T1, internal, 650, 775
-recovered GlimmerHMM_glimmerT_62167-T1, internal, 1724, 1826
-recovered GlimmerHMM_glimmerT_62167-T1, internal, 2112, 2176

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4789
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
7.8    
9.8    
11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
23.5    
25.5    
27.5    
29.4    
31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
64.7    
66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support