-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_725

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3440, 3590
Sorry, prediction snap_scaffold_725-snap.2-T1 fails validation.
(ATG)	 AG	1517-1525	GT	ATG
(GAC)	 AG	2931-3307	GT	AAG
(GAG)	 AG	3440-3590	GT	ATG
-recovered snap_scaffold_725-snap.2-T1, initial, 1517, 1525
-recovered snap_scaffold_725-snap.2-T1, internal, 1517, 1525
-recovered snap_scaffold_725-snap.2-T1, internal, 2931, 3307
-recovered snap_scaffold_725-snap.2-T1, internal, 3440, 3590

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1522, 1648
Couldn't classify 4227, 4375
Sorry, prediction snap_scaffold_725-snap.1-T1 fails validation.
(TTT)	 AG	1522-1648	GT	GGG
(AAT)	 AG	3601-3743	GT	GGG
(GTT)	 AG	4227-4375	GT	AGG
-recovered snap_scaffold_725-snap.1-T1, internal, 1522, 1648
-recovered snap_scaffold_725-snap.1-T1, internal, 3601, 3743
-recovered snap_scaffold_725-snap.1-T1, internal, 4227, 4375
Couldn't classify 1520, 1636
Couldn't classify 4227, 4377
Sorry, prediction pasa_asmbl_51577.p1 fails validation.
(AGT)	 CC	1520-1636	GT	CTG
(AAT)	 AG	3601-3743	GT	GGG
(GTT)	 AG	4227-4377	CA	GTC
-recovered pasa_asmbl_51577.p1, internal, 3601, 3743
Couldn't classify 4227, 4396
Sorry, prediction Augustus_model.g41321.t1 fails validation.
(ATG)	 AC	1424-1455	GT	AGG
(TTT)	 AG	1522-1636	GT	CTG
(AAT)	 AG	3601-3743	GT	GGG
(GTT)	 AG	4227-4396	GT	AGG
-recovered Augustus_model.g41321.t1, initial, 1424, 1455
-recovered Augustus_model.g41321.t1, internal, 1522, 1636
-recovered Augustus_model.g41321.t1, internal, 3601, 3743
-recovered Augustus_model.g41321.t1, internal, 4227, 4396
Couldn't classify 1522, 1636
Sorry, prediction GlimmerHMM_glimmerT_62165-T1 fails validation.
(TTT)	 AG	1522-1636	GT	CTG
(AAT)	 AG	3601-3743	GT	GGG
(GTT)	 AG	4227-4428	AG	GAA
-recovered GlimmerHMM_glimmerT_62165-T1, terminal, 4227, 4428
-recovered GlimmerHMM_glimmerT_62165-T1, internal, 1522, 1636
-recovered GlimmerHMM_glimmerT_62165-T1, internal, 3601, 3743
Couldn't classify 1522, 1636
Couldn't classify 4227, 4375
Sorry, prediction GeneMark_model.108262_t fails validation.
(TTT)	 AG	1522-1636	GT	CTG
(CAA)	 AG	1663-1691	GT	GTG
(CAA)	 AG	1729-1885	GT	AGG
(TGT)	 AG	3168-3224	GT	CTG
(AAT)	 AG	3601-3743	GT	GGG
(GTT)	 AG	4227-4375	GT	AGG
-recovered GeneMark_model.108262_t, internal, 1522, 1636
-recovered GeneMark_model.108262_t, internal, 1663, 1691
-recovered GeneMark_model.108262_t, internal, 1729, 1885
-recovered GeneMark_model.108262_t, internal, 3168, 3224
-recovered GeneMark_model.108262_t, internal, 3601, 3743
-recovered GeneMark_model.108262_t, internal, 4227, 4375

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3276, rend_intergenic: 1517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4797
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3276, rend_intergenic: 1517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support