-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_721

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 139, 318
Sorry, prediction snap_scaffold_721-snap.1-T1 fails validation.
(GTG)	 AG	139-318	GT	ACG
(GGT)	 AG	382-408	GT	TTG
(GAC)	 AG	693-820	GT	CTG
(CCC)	 AG	1526-1603	GT	AAG
(GTT)	 AG	1703-1757	TC	GAT
-recovered snap_scaffold_721-snap.1-T1, terminal, 1703, 1757
-recovered snap_scaffold_721-snap.1-T1, internal, 139, 318
-recovered snap_scaffold_721-snap.1-T1, internal, 382, 408
-recovered snap_scaffold_721-snap.1-T1, internal, 693, 820
-recovered snap_scaffold_721-snap.1-T1, internal, 1526, 1603
Valid prediction for GeneMark_model.108254_t
Couldn't classify 4331, 4497
Sorry, prediction snap_scaffold_721-snap.3-T1 fails validation.
(ATG)	 AT	3458-3471	GT	TTG
(ACC)	 AG	4331-4497	GT	GGG
-recovered snap_scaffold_721-snap.3-T1, initial, 3458, 3471
-recovered snap_scaffold_721-snap.3-T1, internal, 4331, 4497
Couldn't classify 139, 225
Couldn't classify 4331, 4497
Sorry, prediction Augustus_model.g41317.t1 fails validation.
(GTG)	 AG	139-225	GT	CGG
(GGT)	 AG	382-408	GT	TTG
(GAC)	 AG	693-810	GT	TGG
(GCT)	 AG	2111-2165	GT	ATG
(ACC)	 AG	4331-4497	GT	GGG
-recovered Augustus_model.g41317.t1, internal, 139, 225
-recovered Augustus_model.g41317.t1, internal, 382, 408
-recovered Augustus_model.g41317.t1, internal, 693, 810
-recovered Augustus_model.g41317.t1, internal, 2111, 2165
-recovered Augustus_model.g41317.t1, internal, 4331, 4497
Valid prediction for GlimmerHMM_glimmerT_62160-T1
Couldn't classify 4331, 4497
Sorry, prediction GlimmerHMM_glimmerT_62161-T1 fails validation.
(ATG)	 GC	780-820	GT	CTG
(CCC)	 AG	1526-1603	GT	AAG
(ACC)	 AG	4331-4497	GT	GGG
-recovered GlimmerHMM_glimmerT_62161-T1, initial, 780, 820
-recovered GlimmerHMM_glimmerT_62161-T1, internal, 1526, 1603
-recovered GlimmerHMM_glimmerT_62161-T1, internal, 4331, 4497
Couldn't classify 4331, 4497
Sorry, prediction GeneMark_model.108256_t fails validation.
(ATG)	 GT	1491-1603	GT	AAG
(ACC)	 AG	4331-4497	GT	GGG
-recovered GeneMark_model.108256_t, initial, 1491, 1603
-recovered GeneMark_model.108256_t, internal, 4331, 4497

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108255_t
Couldn't classify 361, 495
Sorry, prediction snap_scaffold_721-snap.2-T1 fails validation.
(GGT)	 AG	361-495	GT	ATG
(TAC)	 AG	993-1105	GT	AAG
(GTT)	 AG	1464-1485	CA	AAC
-recovered snap_scaffold_721-snap.2-T1, terminal, 1464, 1485
-recovered snap_scaffold_721-snap.2-T1, internal, 361, 495
-recovered snap_scaffold_721-snap.2-T1, internal, 993, 1105

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4493, rend_intergenic: 3458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4853
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4493, rend_intergenic: 3458  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support