-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_720

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_720-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 275, 431
Couldn't classify 4121, 4201
Sorry, prediction GeneMark_model.108253_t fails validation.
(AGG)	 AG	275-431	GT	CCG
(ACC)	 AG	2141-2189	GT	CCG
(ACT)	 AG	2382-2477	GT	GAG
(GGG)	 AG	2501-2578	GT	CGG
(AGA)	 AG	3237-3257	GT	GAG
(AGA)	 AG	3279-3332	GT	GGG
(GCT)	 AG	3705-3755	GT	ATG
(AGG)	 AG	4032-4061	GT	GAG
(ATG)	 AG	4092-4097	GT	AAG
(GAG)	 AG	4121-4201	GT	ATG
-recovered GeneMark_model.108253_t, initial, 4092, 4097
-recovered GeneMark_model.108253_t, terminal, 2382, 2477
-recovered GeneMark_model.108253_t, internal, 275, 431
-recovered GeneMark_model.108253_t, internal, 2141, 2189
-recovered GeneMark_model.108253_t, internal, 2382, 2477
-recovered GeneMark_model.108253_t, internal, 2501, 2578
-recovered GeneMark_model.108253_t, internal, 3237, 3257
-recovered GeneMark_model.108253_t, internal, 3279, 3332
-recovered GeneMark_model.108253_t, internal, 3705, 3755
-recovered GeneMark_model.108253_t, internal, 4032, 4061
-recovered GeneMark_model.108253_t, internal, 4092, 4097
-recovered GeneMark_model.108253_t, internal, 4121, 4201
Valid prediction for GlimmerHMM_glimmerT_62159-T1
Valid prediction for GlimmerHMM_glimmerT_62158-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4856
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support