-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_72

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61187-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61187-T1 9319-9667-terminal-1 is invalid.
Valid prediction for GeneMark_model.106404_t
Valid prediction for GlimmerHMM_glimmerT_61189-T1
Valid prediction for Augustus_model.g40704.t1
Valid prediction for snap_scaffold_72-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_61190-T1
Couldn't classify 191, 267
Sorry, prediction snap_scaffold_72-snap.1-T1 fails validation.
(TCG)	 AG	191-267	GT	TTG
(GTG)	 AG	4670-4769	GT	CCG
(GTT)	 AG	6187-6224	TC	AGT
-recovered snap_scaffold_72-snap.1-T1, terminal, 6187, 6224
-recovered snap_scaffold_72-snap.1-T1, internal, 191, 267
-recovered snap_scaffold_72-snap.1-T1, internal, 4670, 4769
Valid prediction for snap_scaffold_72-snap.4-T1
Valid prediction for GeneMark_model.106406_t
Valid prediction for GeneMark_model.106407_t
Valid prediction for GeneMark_model.106403_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106405_t
Valid prediction for snap_scaffold_72-snap.2-T1
Valid prediction for snap_scaffold_72-snap.6-T1
Valid prediction for GeneMark_model.106401_t
Valid prediction for GeneMark_model.106402_t
Couldn't classify 24301, 24309
Sorry, prediction GeneMark_model.106400_t fails validation.
(ATG)	 TG	23910-23943	GT	CTG
(GGG)	 AG	24107-24218	GT	CAG
(AGA)	 AG	24301-24309	GT	GAG
-recovered GeneMark_model.106400_t, initial, 23910, 23943
-recovered GeneMark_model.106400_t, internal, 24107, 24218
-recovered GeneMark_model.106400_t, internal, 24301, 24309
Valid prediction for GlimmerHMM_glimmerT_61188-T1
Valid prediction for snap_scaffold_72-snap.3-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6224, rend_intergenic: 2494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16790, rend_intergenic: 8773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 24331
-exon list size: 83


building trellis

1.2    
2.4    
3.5    
4.7    
5.9    
7.1    
8.2    
9.4    
10.6    
11.8    
12.9    
14.1    
15.3    
16.5    
17.6    
18.8    
20.0    
21.2    
22.4    
23.5    
24.7    
25.9    
27.1    
28.2    
29.4    
30.6    
31.8    
32.9    
34.1    
35.3    
36.5    
37.6    
38.8    
40.0    
41.2    
42.4    
43.5    
44.7    
45.9    
47.1    
48.2    
49.4    
50.6    
51.8    
52.9    
54.1    
55.3    
56.5    
57.6    
58.8    
60.0    
61.2    
62.4    
63.5    
64.7    
65.9    
67.1    
68.2    
69.4    
70.6    
71.8    
72.9    
74.1    
75.3    
76.5    
77.6    
78.8    
80.0    
81.2    
82.4    
83.5    
84.7    
85.9    
87.1    
88.2    
89.4    
90.6    
91.8    
92.9    
94.1    
95.3    
96.5    
97.6    
98.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 6224, rend_intergenic: 2494  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16790, rend_intergenic: 8773  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12028
-exon list size: 41


building trellis

2.3    
4.7    
7.0    
9.3    
11.6    
14.0    
16.3    
18.6    
20.9    
23.3    
25.6    
27.9    
30.2    
32.6    
34.9    
37.2    
39.5    
41.9    
44.2    
46.5    
48.8    
51.2    
53.5    
55.8    
58.1    
60.5    
62.8    
65.1    
67.4    
69.8    
72.1    
74.4    
76.7    
79.1    
81.4    
83.7    
86.0    
88.4    
90.7    
93.0    
95.3    
97.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support