-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_719

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for CodingQuarry_transcript_57647-T1
Valid prediction for GlimmerHMM_glimmerT_62157-T1
Valid prediction for HiQ_model.g41316.t1
Couldn't classify 4674, 4823
Sorry, prediction pasa_asmbl_51562.p1 fails validation.
(ATG)	 AC	2276-2377	GT	AGG
(GTG)	 AG	3044-3196	GT	AGG
(GTG)	 AG	3875-4038	GT	AGG
(GGC)	 AG	4445-4496	GT	GGG
(GTG)	 AG	4674-4823	GT	TGG
-recovered pasa_asmbl_51562.p1, initial, 2276, 2377
-recovered pasa_asmbl_51562.p1, internal, 3044, 3196
-recovered pasa_asmbl_51562.p1, internal, 3875, 4038
-recovered pasa_asmbl_51562.p1, internal, 4445, 4496
-recovered pasa_asmbl_51562.p1, internal, 4674, 4823
Couldn't classify 4674, 4823
Sorry, prediction snap_scaffold_719-snap.1-T1 fails validation.
(ATG)	 AC	2276-2377	GT	AGG
(GTG)	 AG	3044-3196	GT	AGG
(GTG)	 AG	3875-4179	GT	CTG
(GGC)	 AG	4445-4496	GT	GGG
(GTG)	 AG	4674-4823	GT	TGG
-recovered snap_scaffold_719-snap.1-T1, initial, 2276, 2377
-recovered snap_scaffold_719-snap.1-T1, internal, 3044, 3196
-recovered snap_scaffold_719-snap.1-T1, internal, 3875, 4179
-recovered snap_scaffold_719-snap.1-T1, internal, 4445, 4496
-recovered snap_scaffold_719-snap.1-T1, internal, 4674, 4823
Couldn't classify 1266, 1286
Couldn't classify 4674, 4823
Sorry, prediction GeneMark_model.108252_t fails validation.
(AGG)	 AG	1266-1286	GT	GGG
(ACT)	 AG	2269-2377	GT	AGG
(GTG)	 AG	3044-3196	GT	AGG
(GTG)	 AG	3875-4179	GT	CTG
(GGC)	 AG	4445-4496	GT	GGG
(GTG)	 AG	4674-4823	GT	TGG
-recovered GeneMark_model.108252_t, internal, 1266, 1286
-recovered GeneMark_model.108252_t, internal, 2269, 2377
-recovered GeneMark_model.108252_t, internal, 3044, 3196
-recovered GeneMark_model.108252_t, internal, 3875, 4179
-recovered GeneMark_model.108252_t, internal, 4445, 4496
-recovered GeneMark_model.108252_t, internal, 4674, 4823

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 48, 79
Sorry, prediction snap_scaffold_719-snap.2-T1 fails validation.
(GTG)	 AG	48-79	GT	AGG
(CTC)	 AG	681-848	GT	CAG
(AAT)	 AG	2233-2322	AC	AAA
-recovered snap_scaffold_719-snap.2-T1, terminal, 2233, 2322
-recovered snap_scaffold_719-snap.2-T1, internal, 48, 79
-recovered snap_scaffold_719-snap.2-T1, internal, 681, 848
Valid prediction for Augustus_model.g41315.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4823, rend_intergenic: 2536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4857
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4823, rend_intergenic: 2536  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support