-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_718

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 901, 1103
Sorry, prediction snap_scaffold_718-snap.1-T1 fails validation.
(CAG)	 AG	901-1103	GT	GGG
-recovered snap_scaffold_718-snap.1-T1, internal, 901, 1103
Couldn't classify 901, 1037
Sorry, prediction GeneMark_model.108251_t fails validation.
(CAG)	 AG	901-1037	GT	GGG
(AGG)	 AG	1063-1089	GT	GAG
(AGG)	 AG	1121-1165	GT	GGG
(GGG)	 AG	1188-1223	GT	AGG
(GGA)	 AG	1279-1302	GT	GGG
(GGG)	 AG	1353-1439	GT	AGG
(AGA)	 AG	1484-1634	AG	AGA
-recovered GeneMark_model.108251_t, terminal, 1484, 1634
-recovered GeneMark_model.108251_t, internal, 901, 1037
-recovered GeneMark_model.108251_t, internal, 1063, 1089
-recovered GeneMark_model.108251_t, internal, 1121, 1165
-recovered GeneMark_model.108251_t, internal, 1188, 1223
-recovered GeneMark_model.108251_t, internal, 1279, 1302
-recovered GeneMark_model.108251_t, internal, 1353, 1439
Couldn't classify 901, 1026
Sorry, prediction GlimmerHMM_glimmerT_62156-T1 fails validation.
(CAG)	 AG	901-1026	GT	GGG
(CCT)	 AG	4717-4728	GA	GAG
-recovered GlimmerHMM_glimmerT_62156-T1, terminal, 4717, 4728
-recovered GlimmerHMM_glimmerT_62156-T1, internal, 901, 1026
Couldn't classify 2424, 2531
Sorry, prediction GeneMark_model.108250_t fails validation.
(ATG)	 AA	1740-1759	GT	GAG
(AGA)	 AG	1856-1942	GC	GAG
(AGA)	 AG	1964-2020	GT	GAG
(AGA)	 AG	2196-2402	GT	CAG
(ACA)	 AG	2424-2531	GC	AGG
-recovered GeneMark_model.108250_t, initial, 1740, 1759
-recovered GeneMark_model.108250_t, internal, 1856, 1942
-recovered GeneMark_model.108250_t, internal, 1964, 2020
-recovered GeneMark_model.108250_t, internal, 2196, 2402
-recovered GeneMark_model.108250_t, internal, 2424, 2531

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4857
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support