-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_713

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108244_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_713-snap.1-T1
Couldn't classify 73, 292
Sorry, prediction GeneMark_model.108245_t fails validation.
(AAG)	 AG	73-292	GT	TTG
(CCA)	 AG	783-1000	GT	CAG
(GAG)	 AG	1182-1211	GT	AAG
(GGA)	 AG	1279-1378	CG	AGC
-recovered GeneMark_model.108245_t, terminal, 1279, 1378
-recovered GeneMark_model.108245_t, internal, 73, 292
-recovered GeneMark_model.108245_t, internal, 783, 1000
-recovered GeneMark_model.108245_t, internal, 1182, 1211

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4877
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support