-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_711

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 197, 345
Sorry, prediction Augustus_model.g41310.t1 fails validation.
(TCT)	 AG	197-345	GT	AGG
(CAC)	 AG	941-1035	GC	AGG
-recovered Augustus_model.g41310.t1, terminal, 941, 1035
-recovered Augustus_model.g41310.t1, internal, 197, 345
-recovered Augustus_model.g41310.t1, internal, 941, 1035
Valid prediction for GeneMark_model.108242_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4556, 4666
Sorry, prediction GeneMark_model.108241_t fails validation.
(ATG)	 GA	2348-2409	GT	AGG
(AGA)	 AG	2433-2459	GT	ATG
(GAG)	 AG	2493-2525	GT	AAG
(AAG)	 AG	2578-2661	GT	ATG
(TAG)	 AG	2687-2695	GT	GAG
(AGG)	 AG	2759-2887	GT	GAG
(GCG)	 AG	2908-3009	GT	CGG
(GGA)	 AG	3330-3395	GC	GGG
(AGG)	 AG	3598-3618	GT	GGG
(GGG)	 AG	3646-3705	GT	GGG
(AGG)	 AG	3727-3837	GT	GAG
(AGT)	 AG	3941-3979	GT	GAG
(GTG)	 AG	4032-4116	GT	GAG
(GCC)	 AG	4556-4666	GT	TGG
-recovered GeneMark_model.108241_t, initial, 2348, 2409
-recovered GeneMark_model.108241_t, internal, 2433, 2459
-recovered GeneMark_model.108241_t, internal, 2493, 2525
-recovered GeneMark_model.108241_t, internal, 2578, 2661
-recovered GeneMark_model.108241_t, internal, 2687, 2695
-recovered GeneMark_model.108241_t, internal, 2759, 2887
-recovered GeneMark_model.108241_t, internal, 2908, 3009
-recovered GeneMark_model.108241_t, internal, 3330, 3395
-recovered GeneMark_model.108241_t, internal, 3598, 3618
-recovered GeneMark_model.108241_t, internal, 3646, 3705
-recovered GeneMark_model.108241_t, internal, 3727, 3837
-recovered GeneMark_model.108241_t, internal, 3941, 3979
-recovered GeneMark_model.108241_t, internal, 4032, 4116
-recovered GeneMark_model.108241_t, internal, 4556, 4666
Couldn't classify 528, 719
Sorry, prediction GeneMark_model.108243_t fails validation.
(ACA)	 AG	528-719	GT	CTG
(ATG)	 AG	764-781	GT	GAG
(GAG)	 AG	825-843	GA	AGG
-recovered GeneMark_model.108243_t, initial, 764, 781
-recovered GeneMark_model.108243_t, terminal, 825, 843
-recovered GeneMark_model.108243_t, internal, 528, 719
-recovered GeneMark_model.108243_t, internal, 764, 781
Valid prediction for snap_scaffold_711-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62150-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4884
-exon list size: 49


building trellis

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98.0    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support