-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_710

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4609, 4758
Sorry, prediction GeneMark_model.108240_t fails validation.
(ATG)	 GA	3921-3967	GT	AGG
(AGA)	 AG	3991-4008	GT	AGG
(AGA)	 AG	4053-4070	GT	AGG
(AGA)	 AG	4099-4104	GT	GCG
(AGA)	 AG	4609-4758	GT	AAG
-recovered GeneMark_model.108240_t, initial, 3921, 3967
-recovered GeneMark_model.108240_t, internal, 3991, 4008
-recovered GeneMark_model.108240_t, internal, 4053, 4070
-recovered GeneMark_model.108240_t, internal, 4099, 4104
-recovered GeneMark_model.108240_t, internal, 4609, 4758

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_710-snap.1-T1
Couldn't classify 2202, 2275
Sorry, prediction GlimmerHMM_glimmerT_62149-T1 fails validation.
(AAG)	 AG	2202-2275	GT	CTG
(GCC)	 AG	4243-4299	AG	AGA
-recovered GlimmerHMM_glimmerT_62149-T1, terminal, 4243, 4299
-recovered GlimmerHMM_glimmerT_62149-T1, internal, 2202, 2275
Valid prediction for GeneMark_model.108239_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4888
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support