-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_708

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62147-T1
Couldn't classify 2360, 2740
Sorry, prediction pasa_asmbl_51559.p1 fails validation.
(TAT)	 CT	2360-2740	CA	CCC
Valid prediction for Augustus_model.g41308.t1
Couldn't classify 2147, 2536
Couldn't classify 2780, 2926
Sorry, prediction GeneMark_model.108236_t fails validation.
(GCC)	 AG	2147-2536	GT	TGG
(CAG)	 AG	2780-2926	GT	AGG
-recovered GeneMark_model.108236_t, internal, 2147, 2536
-recovered GeneMark_model.108236_t, internal, 2780, 2926
Valid prediction for snap_scaffold_708-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4900
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support