-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_706

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62143-T1
Couldn't classify 129, 303
Couldn't classify 2503, 2556
Sorry, prediction snap_scaffold_706-snap.1-T1 fails validation.
(ACG)	 AG	129-303	GT	AGG
(ATG)	 AG	556-621	GT	TGG
(ACC)	 AG	654-769	GT	AGG
(GTG)	 AG	2022-2121	GT	AGG
(GTC)	 AG	2503-2556	GT	AGG
add_exon() Sorry, snap_scaffold_706-snap.1-T1 556-621-initial-1 is invalid.
-recovered snap_scaffold_706-snap.1-T1, initial, 556, 621
-recovered snap_scaffold_706-snap.1-T1, internal, 129, 303
-recovered snap_scaffold_706-snap.1-T1, internal, 556, 621
-recovered snap_scaffold_706-snap.1-T1, internal, 654, 769
-recovered snap_scaffold_706-snap.1-T1, internal, 2022, 2121
-recovered snap_scaffold_706-snap.1-T1, internal, 2503, 2556
Valid prediction for GeneMark_model.108232_t
Couldn't classify 129, 303
Sorry, prediction Augustus_model.g41306.t1 fails validation.
(ACG)	 AG	129-303	GT	AGG
(ACC)	 AG	654-769	GT	AGG
(GTG)	 AG	2022-2168	CT	AGC
-recovered Augustus_model.g41306.t1, terminal, 2022, 2168
-recovered Augustus_model.g41306.t1, internal, 129, 303
-recovered Augustus_model.g41306.t1, internal, 654, 769
Valid prediction for GeneMark_model.108233_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62144-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4905
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support