-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_705

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 647, 791
Sorry, prediction GeneMark_model.108231_t fails validation.
(AGC)	 AG	647-791	GT	AGG
(GGG)	 AG	3463-3527	GT	AAG
(AAG)	 AG	3660-3682	GT	GGG
(TGT)	 AG	3779-4034	GT	AAG
(AGG)	 AG	4061-4085	TG	AAT
-recovered GeneMark_model.108231_t, terminal, 4061, 4085
-recovered GeneMark_model.108231_t, internal, 647, 791
-recovered GeneMark_model.108231_t, internal, 3463, 3527
-recovered GeneMark_model.108231_t, internal, 3660, 3682
-recovered GeneMark_model.108231_t, internal, 3779, 4034
Couldn't classify 3779, 4034
Sorry, prediction snap_scaffold_705-snap.1-T1 fails validation.
(ATG)	 TA	1190-1196	GT	GGG
(TGT)	 AG	3779-4034	GT	AAG
-recovered snap_scaffold_705-snap.1-T1, initial, 1190, 1196
-recovered snap_scaffold_705-snap.1-T1, internal, 3779, 4034

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 202, 308
Sorry, prediction snap_scaffold_705-snap.2-T1 fails validation.
(GGT)	 AG	202-308	GT	GGG
(GTG)	 AG	966-1142	GT	TGG
(TAC)	 AG	1377-1496	AC	AGA
-recovered snap_scaffold_705-snap.2-T1, terminal, 1377, 1496
-recovered snap_scaffold_705-snap.2-T1, internal, 202, 308
-recovered snap_scaffold_705-snap.2-T1, internal, 966, 1142
Couldn't classify 202, 308
Sorry, prediction GlimmerHMM_glimmerT_62142-T1 fails validation.
(GGT)	 AG	202-308	GT	GGG
(GTG)	 AG	966-1142	GT	TGG
(CTT)	 AG	3101-3148	TT	GAT
-recovered GlimmerHMM_glimmerT_62142-T1, terminal, 3101, 3148
-recovered GlimmerHMM_glimmerT_62142-T1, internal, 202, 308
-recovered GlimmerHMM_glimmerT_62142-T1, internal, 966, 1142
Couldn't classify 202, 308
Sorry, prediction Augustus_model.g41305.t1 fails validation.
(GGT)	 AG	202-308	GT	GGG
(GTG)	 AG	966-1142	GT	TGG
(TAC)	 AG	1377-1496	AC	AGA
-recovered Augustus_model.g41305.t1, terminal, 1377, 1496
-recovered Augustus_model.g41305.t1, internal, 202, 308
-recovered Augustus_model.g41305.t1, internal, 966, 1142

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4034, rend_intergenic: 3430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 4925
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4034, rend_intergenic: 3430  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support