-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_704

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108228_t
Couldn't classify 1584, 1680
Couldn't classify 4220, 4303
Sorry, prediction snap_scaffold_704-snap.1-T1 fails validation.
(CTC)	 AG	1584-1680	GT	AGG
(AGA)	 AG	2229-2360	GT	TCG
(AGT)	 AG	2505-2615	GT	AGG
(GAG)	 AG	4220-4303	GT	TGG
-recovered snap_scaffold_704-snap.1-T1, internal, 1584, 1680
-recovered snap_scaffold_704-snap.1-T1, internal, 2229, 2360
-recovered snap_scaffold_704-snap.1-T1, internal, 2505, 2615
-recovered snap_scaffold_704-snap.1-T1, internal, 4220, 4303

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108229_t
Couldn't classify 39, 77
Sorry, prediction GeneMark_model.108230_t fails validation.
(AGA)	 AG	39-77	GT	GGG
(AGA)	 AG	101-130	GT	GGG
(AGG)	 AG	2116-2233	TC	AGT
-recovered GeneMark_model.108230_t, terminal, 2116, 2233
-recovered GeneMark_model.108230_t, internal, 39, 77
-recovered GeneMark_model.108230_t, internal, 101, 130
Valid prediction for GlimmerHMM_glimmerT_62141-T1
Valid prediction for Augustus_model.g41304.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 4927
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support